LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
COL4A2-AS1
hsa-miR-146a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000417970
Biotype: antisense
Gene id: ENSG00000232814
Gene Name: COL4A2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
415-438
0.025
1
6mer
292-310
0.005
2
CTD-3229J4.1
hsa-miR-146a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564852
Biotype: lincRNA
Gene id: ENSG00000261555
Gene Name: CTD-3229J4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-72
0.018
1
7mer
533-554
0.009
0
8mer+wobble
364-382
0.003
1
CAPN10-AS1
hsa-miR-146a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000567819
Biotype: antisense
Gene id: ENSG00000260942
Gene Name: CAPN10-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
618-634
0.030
2
XLOC_010987
hsa-miR-146a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022407
Biotype: transcript isomorph
Gene id: XLOC_010987
Gene Name: XLOC_010987
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-237
0.030
0
AC000403.4
hsa-miR-146a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613696
Biotype: lincRNA
Gene id: ENSG00000278727
Gene Name: AC000403.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2922-2934
0.027
Not Conserved
6mer
1121-1140
0.002
3
6mer
1196-1220
0.001
3
CTD-2251F13.1
hsa-miR-146a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000508469
Biotype: lincRNA
Gene id: ENSG00000248975
Gene Name: CTD-2251F13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
219-238
0.030
0
RP11-575F12.1
hsa-miR-146a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540244
Biotype: lincRNA
Gene id: ENSG00000249345
Gene Name: RP11-575F12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-113
0.023
1
6mer
114-141
0.006
1
RP11-264B17.3
hsa-miR-146a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569969
Biotype: retained_intron
Gene id: ENSG00000261067
Gene Name: RP11-264B17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5266-5281
0.023
1
8mer
2216-2237
0.005
6
6mer
181-197
0.002
1
COL4A2-AS1
hsa-miR-146a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_046583.1
Biotype: antisense
Gene id: NR_046583.1 (gene)
Gene Name: COL4A2-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
414-437
0.025
1
6mer
291-309
0.005
2
XLOC_009561
hsa-miR-146a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019766
Biotype: transcript isomorph
Gene id: XLOC_009561
Gene Name: XLOC_009561
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
227-250
0.030
1
XLOC_003718
hsa-miR-146a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007406
Biotype: transcript isomorph
Gene id: XLOC_003718
Gene Name: XLOC_003718
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
580-601
0.025
5
6mer
2982-2996
0.004
1
DGCR5
hsa-miR-146a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000424407
Biotype: antisense
Gene id: ENSG00000237517
Gene Name: DGCR5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
320-347
0.030
0
ZFHX4-AS1
hsa-miR-146a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_024360.1
Biotype: antisense
Gene id: NR_024360.1 (gene)
Gene Name: ZFHX4-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
765-790
0.013
0
7mer
710-731
0.007
2
6mer
420-444
0.005
5
6mer
1071-1089
0.002
1
6mer
718-739
0.002
3
ZRANB2-AS2
hsa-miR-146a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623721
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1002-1024
0.018
0
7mer
422-443
0.011
2
TTN-AS1
hsa-miR-146a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000589391
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
763-776
0.018
7
6mer
551-562
0.006
8
6mer
530-553
0.006
8
LEMD1-AS1
hsa-miR-146a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447832
Biotype: antisense
Gene id: ENSG00000226235
Gene Name: LEMD1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2511-2528
0.014
4
7mer
1954-1973
0.012
2
6mer
190-214
0.003
1
RP11-481J2.3
hsa-miR-146a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000613275
Biotype: antisense
Gene id: ENSG00000276131
Gene Name: RP11-481J2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
499-517
0.023
8
7mer
183-202
0.006
1
RP11-553L6.5
hsa-miR-146a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000570269
Biotype: lincRNA
Gene id: ENSG00000259976
Gene Name: RP11-553L6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1279-1297
0.017
1
6mer
394-410
0.008
10
6mer
578-601
0.005
3
ZFHX4-AS1
hsa-miR-146a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518143
Biotype: antisense
Gene id: ENSG00000253661
Gene Name: ZFHX4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
763-788
0.013
0
7mer
708-729
0.007
2
6mer
418-442
0.005
5
6mer
1069-1087
0.002
1
6mer
716-737
0.002
3
TPTEP1
hsa-miR-146a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000426585
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4539-4558
0.021
0
6mer
396-410
0.005
1
6mer
4864-4877
0.003
1
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