LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
C21orf49
hsa-miR-146a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000382378
Biotype: lincRNA
Gene id: ENSG00000205930
Gene Name: C21orf49
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-239
0.031
Not Conserved
XLOC_012019
hsa-miR-146a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024739
Biotype: transcript isomorph
Gene id: XLOC_012019
Gene Name: XLOC_012019
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
518-543
0.020
2
7mer
488-504
0.011
1
DACT3-AS1
hsa-miR-146a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000525352
Biotype: antisense
Gene id: ENSG00000245598
Gene Name: DACT3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-93
0.020
5
6mer
99-117
0.007
5
6mer
99-125
0.004
1
RP11-320P7.2
hsa-miR-146a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552324
Biotype: lincRNA
Gene id: ENSG00000257139
Gene Name: RP11-320P7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-106
0.022
1
6mer
25-51
0.006
1
6mer
173-186
0.003
1
BCDIN3D-AS1
hsa-miR-146a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_027501.1
Biotype: antisense
Gene id: NR_027501.1 (gene)
Gene Name: BCDIN3D-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
963-983
0.014
1
7mer
317-334
0.013
3
6mer
2183-2202
0.002
0
6mer
1385-1396
0.002
2
RP11-4L24.3
hsa-miR-146a-5p
0.769
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000619442
Biotype: lincRNA
Gene id: ENSG00000275450
Gene Name: RP11-4L24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
58-77
0.027
0
7mer
1230-1247
0.002
0
6mer
1901-1920
0.002
0
BCDIN3D-AS1
hsa-miR-146a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548872
Biotype: antisense
Gene id: ENSG00000258057
Gene Name: BCDIN3D-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
968-988
0.014
1
7mer
322-339
0.013
3
6mer
2188-2207
0.002
0
6mer
1390-1401
0.002
2
XLOC_001046
hsa-miR-146a-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001691
Biotype: transcript isomorph
Gene id: XLOC_001046
Gene Name: XLOC_001046
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
543-566
0.027
2
6mer
223-247
0.004
0
SPAG5-AS1
hsa-miR-146a-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000414744
Biotype: antisense
Gene id: ENSG00000227543
Gene Name: SPAG5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1355-1381
0.019
4
6mer
2104-2129
0.006
4
8mer
67-82
0.003
1
6mer
686-704
0.001
0
CFLAR-AS1
hsa-miR-146a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000595372
Biotype: antisense
Gene id: ENSG00000226312
Gene Name: CFLAR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-323
0.024
2
6mer
37-43
0.006
3
BCDIN3D-AS1
hsa-miR-146a-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_027499.1
Biotype: antisense
Gene id: NR_027499.1 (gene)
Gene Name: BCDIN3D-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
967-987
0.014
1
7mer
321-338
0.013
3
6mer
2187-2206
0.002
0
6mer
1389-1400
0.002
2
RP11-556G22.3
hsa-miR-146a-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505528
Biotype: antisense
Gene id: ENSG00000250092
Gene Name: RP11-556G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
691-717
0.016
1
8mer
188-201
0.014
Not Conserved
MACROD2-AS1
hsa-miR-146a-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000439451
Biotype: antisense
Gene id: ENSG00000235914
Gene Name: MACROD2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-167
0.027
1
6mer
522-543
0.003
0
RP3-399L15.3
hsa-miR-146a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000519270
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1047-1065
0.027
1
6mer
544-560
0.003
1
SGMS1-AS1
hsa-miR-146a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000443374
Biotype: antisense
Gene id: ENSG00000226200
Gene Name: SGMS1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6075-6096
0.007
1
8mer
4245-4263
0.004
0
8mer
2667-2688
0.004
0
7mer
4864-4886
0.003
0
6mer
11242-11252
0.002
0
6mer
9952-9974
0.002
0
6mer
175-193
0.002
1
6mer
3809-3820
0.002
7
6mer
9008-9033
0.002
2
6mer
7674-7698
0.002
0
RP11-381K20.2
hsa-miR-146a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508281
Biotype: antisense
Gene id: ENSG00000250159
Gene Name: RP11-381K20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-50
0.023
3
6mer
679-688
0.004
7
6mer
822-846
0.003
2
XLOC_007736
hsa-miR-146a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016356
Biotype: transcript isomorph
Gene id: XLOC_007736
Gene Name: XLOC_007736
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
97-122
0.013
1
6mer
147-173
0.006
1
6mer
370-397
0.006
1
6mer
83-110
0.005
1
RP11-727A23.10
hsa-miR-146a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530045
Biotype: antisense
Gene id: ENSG00000255234
Gene Name: RP11-727A23.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1777-1797
0.025
0
6mer
2046-2055
0.003
0
6mer
1417-1439
0.002
0
CTD-2144E22.6
hsa-miR-146a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567803
Biotype: lincRNA
Gene id: ENSG00000261566
Gene Name: CTD-2144E22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-368
0.025
1
6mer
273-287
0.005
2
CTD-2620I22.1
hsa-miR-146a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600068
Biotype: processed_transcript
Gene id: ENSG00000269082
Gene Name: CTD-2620I22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-271
0.030
0
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