LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
RP11-147C23.1
hsa-miR-146a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623085
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
357-369
0.026
3
6mer
297-319
0.005
2
RP11-331K15.1
hsa-miR-146a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460586
Biotype: lincRNA
Gene id: ENSG00000241328
Gene Name: RP11-331K15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-290
0.031
3
XLOC_005302
hsa-miR-146a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011819
Biotype: transcript isomorph
Gene id: XLOC_005302
Gene Name: XLOC_005302
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
625-641
0.011
0
7mer
4533-4556
0.011
3
6mer
4202-4215
0.003
0
6mer
2667-2689
0.002
2
6mer
1479-1493
0.001
1
6mer
2980-2997
0.001
0
6mer
2701-2723
0.001
1
XLOC_003323
hsa-miR-146a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005403
Biotype: transcript isomorph
Gene id: XLOC_003323
Gene Name: XLOC_003323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
189-205
0.019
2
6mer
147-169
0.006
4
6mer
1173-1194
0.004
3
6mer
1445-1469
0.002
1
CTA-929C8.9
hsa-miR-146a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18384-18398
0.005
1
7mer
17021-17044
0.004
1
8mer
17042-17064
0.003
1
7mer
22900-22920
0.003
0
7mer
18728-18741
0.003
Not Conserved
6mer
6212-6238
0.002
2
6mer
11138-11153
0.002
1
6mer
9534-9553
0.002
1
6mer
11495-11516
0.002
1
6mer
2319-2340
0.002
1
6mer
22267-22287
0.002
0
6mer
7806-7825
0.001
0
6mer
20213-20236
0.001
0
6mer
7911-7930
0.001
0
6mer
18857-18870
0.001
3
XLOC_001499
hsa-miR-146a-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003711
Biotype: transcript isomorph
Gene id: XLOC_001499
Gene Name: XLOC_001499
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-230
0.025
2
6mer
462-482
0.006
1
XLOC_005277
hsa-miR-146a-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011801
Biotype: transcript isomorph
Gene id: XLOC_005277
Gene Name: XLOC_005277
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
293-315
0.031
3
DARS-AS1
hsa-miR-146a-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000598565
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-238
0.022
1
7mer
555-575
0.009
1
WI2-85898F10.2
hsa-miR-146a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623717
Biotype: antisense
Gene id: ENSG00000279954
Gene Name: WI2-85898F10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2979-2994
0.029
0
6mer
2665-2690
0.002
0
XLOC_006027
hsa-miR-146a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013397
Biotype: transcript isomorph
Gene id: XLOC_006027
Gene Name: XLOC_006027
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-165
0.031
1
RP11-300A12.2
hsa-miR-146a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567616
Biotype: lincRNA
Gene id: ENSG00000259814
Gene Name: RP11-300A12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
262-286
0.024
1
6mer
481-505
0.005
1
6mer
599-616
0.002
0
RP11-411K7.1
hsa-miR-146a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000511369
Biotype: lincRNA
Gene id: ENSG00000236740
Gene Name: RP11-411K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
420-439
0.016
0
7mer
121-137
0.010
2
6mer
35-54
0.005
2
CTD-3018O17.3
hsa-miR-146a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594119
Biotype: retained_intron
Gene id: ENSG00000269834
Gene Name: CTD-3018O17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
182-195
0.010
0
8mer
2404-2419
0.007
0
6mer
2574-2596
0.006
1
6mer
2387-2402
0.004
1
6mer
2170-2185
0.003
1
RP11-973D8.4
hsa-miR-146a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000554022
Biotype: antisense
Gene id: ENSG00000258554
Gene Name: RP11-973D8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-191
0.031
9
AC004485.3
hsa-miR-146a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439839
Biotype: antisense
Gene id: ENSG00000228944
Gene Name: AC004485.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-63
0.031
1
LINC00494
hsa-miR-146a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000416742
Biotype: lincRNA
Gene id: ENSG00000235621
Gene Name: LINC00494
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2778-2797
0.025
0
7mer
1625-1650
0.004
3
6mer
576-600
0.003
0
RP11-831F12.2
hsa-miR-146a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557160
Biotype: antisense
Gene id: ENSG00000258400
Gene Name: RP11-831F12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-211
0.031
1
EFCAB14-AS1
hsa-miR-146a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442839
Biotype: antisense
Gene id: ENSG00000228237
Gene Name: EFCAB14-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
86-113
0.031
1
RP11-141C7.4
hsa-miR-146a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608379
Biotype: lincRNA
Gene id: ENSG00000272792
Gene Name: RP11-141C7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
413-436
0.016
1
6mer
151-171
0.015
1
XLOC_001920
hsa-miR-146a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004071
Biotype: transcript isomorph
Gene id: XLOC_001920
Gene Name: XLOC_001920
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
495-520
0.022
Not Conserved
6mer
815-829
0.008
0
6mer
932-957
0.001
Not Conserved
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