LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
SVIL-AS1
hsa-miR-146a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608994
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-249
0.032
1
RP11-284F21.11
hsa-miR-146a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609800
Biotype: lincRNA
Gene id: ENSG00000272971
Gene Name: RP11-284F21.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
272-295
0.032
2
AC010226.4
hsa-miR-146a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515570
Biotype: antisense
Gene id: ENSG00000249249
Gene Name: AC010226.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
540-567
0.020
8
7mer
377-390
0.012
5
SATB1-AS1
hsa-miR-146a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598740
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-110
0.016
3
6mer
210-234
0.006
5
6mer
313-332
0.005
4
6mer
429-442
0.004
0
XLOC_006949
hsa-miR-146a-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014881
Biotype: transcript isomorph
Gene id: XLOC_006949
Gene Name: XLOC_006949
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-470
0.026
0
6mer
468-483
0.006
1
XLOC_008374
hsa-miR-146a-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017700
Biotype: transcript isomorph
Gene id: XLOC_008374
Gene Name: XLOC_008374
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2923-2943
0.021
Not Conserved
7mer
541-562
0.008
1
6mer
1417-1440
0.002
3
RP11-74D7.3
hsa-miR-146a-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000621925
Biotype: sense_intronic
Gene id: ENSG00000278472
Gene Name: RP11-74D7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-215
0.020
3
6mer
314-339
0.005
3
6mer
292-316
0.004
0
6mer
205-215
0.003
Not Conserved
XLOC_003225
hsa-miR-146a-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006619
Biotype: transcript isomorph
Gene id: XLOC_003225
Gene Name: XLOC_003225
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
978-997
0.025
0
6mer
859-885
0.004
2
6mer
842-856
0.003
1
RP11-384L8.1
hsa-miR-146a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000565519
Biotype: sense_intronic
Gene id: ENSG00000261572
Gene Name: RP11-384L8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
537-555
0.032
1
XLOC_008359
hsa-miR-146a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018093
Biotype: transcript isomorph
Gene id: XLOC_008359
Gene Name: XLOC_008359
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
712-736
0.025
0
6mer
892-915
0.006
1
RP11-265N7.1
hsa-miR-146a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560743
Biotype: lincRNA
Gene id: ENSG00000259450
Gene Name: RP11-265N7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
651-670
0.021
4
7mer
1741-1758
0.005
0
6mer
449-469
0.005
3
RP11-1134I14.8
hsa-miR-146a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000528139
Biotype: lincRNA
Gene id: ENSG00000255366
Gene Name: RP11-1134I14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2344-2369
0.019
1
6mer
91-117
0.005
0
6mer
397-422
0.004
1
6mer
126-151
0.003
1
RP11-538D16.2
hsa-miR-146a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411509
Biotype: lincRNA
Gene id: ENSG00000224810
Gene Name: RP11-538D16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2014-2033
0.021
2
7mer
268-288
0.010
1
XLOC_013490
hsa-miR-146a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028132
Biotype: transcript isomorph
Gene id: XLOC_013490
Gene Name: XLOC_013490
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-158
0.022
1
7mer
212-233
0.010
1
LINC01094
hsa-miR-146a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503259
Biotype: lincRNA
Gene id: ENSG00000251442
Gene Name: LINC01094
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-81
0.029
6
6mer
379-398
0.002
1
RP11-379K17.4
hsa-miR-146a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469301
Biotype: antisense
Gene id: ENSG00000239219
Gene Name: RP11-379K17.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
190-206
0.019
2
6mer
148-170
0.006
4
6mer
1174-1195
0.004
3
6mer
1446-1470
0.002
1
RP11-69C17.3
hsa-miR-146a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421077
Biotype: lincRNA
Gene id: ENSG00000227912
Gene Name: RP11-69C17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
586-610
0.012
0
8mer
655-670
0.010
1
7mer
1395-1417
0.009
1
XLOC_003203
hsa-miR-146a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006587
Biotype: transcript isomorph
Gene id: XLOC_003203
Gene Name: XLOC_003203
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17-34
0.025
0
6mer
344-366
0.006
1
CMP21-97G8.1
hsa-miR-146a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000608665
Biotype: lincRNA
Gene id: ENSG00000273104
Gene Name: CMP21-97G8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
322-340
0.022
1
6mer
294-311
0.009
1
XLOC_002884
hsa-miR-146a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007011
Biotype: transcript isomorph
Gene id: XLOC_002884
Gene Name: XLOC_002884
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
403-425
0.026
1
7mer
392-405
0.005
0
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