LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
RP3-400B16.1
hsa-miR-146a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000427049
Biotype: lincRNA
Gene id: ENSG00000234817
Gene Name: RP3-400B16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-290
0.022
1
6mer
1933-1957
0.006
2
6mer
1794-1819
0.003
0
6mer
1402-1416
0.002
0
ST6GAL2-IT1
hsa-miR-146a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446058
Biotype: sense_intronic
Gene id: ENSG00000238250
Gene Name: ST6GAL2-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-364
0.033
0
RP13-539F13.3
hsa-miR-146a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512833
Biotype: lincRNA
Gene id: ENSG00000250406
Gene Name: RP13-539F13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-384
0.028
5
6mer
2765-2779
0.004
1
LINC00336
hsa-miR-146a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000477984
Biotype: lincRNA
Gene id: ENSG00000197251
Gene Name: LINC00336
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-162
0.030
2
6mer
1731-1752
0.002
0
RP11-384C4.7
hsa-miR-146a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442146
Biotype: antisense
Gene id: ENSG00000234915
Gene Name: RP11-384C4.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-262
0.024
1
6mer
172-191
0.008
4
SPAG5-AS1
hsa-miR-146a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584675
Biotype: retained_intron
Gene id: ENSG00000227543
Gene Name: SPAG5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
906-932
0.019
4
6mer
94-112
0.007
9
6mer
1655-1680
0.006
4
XLOC_000294
hsa-miR-146a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001027
Biotype: transcript isomorph
Gene id: XLOC_000294
Gene Name: XLOC_000294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1563-1584
0.009
3
8mer
1959-1965
0.007
4
6mer
9294-9314
0.006
3
7mer
3608-3622
0.003
1
6mer
6149-6174
0.003
6
6mer
5477-5503
0.002
5
6mer
1314-1339
0.001
1
6mer
7096-7111
0.001
1
RP11-415G4.1
hsa-miR-146a-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617598
Biotype: lincRNA
Gene id: ENSG00000274090
Gene Name: RP11-415G4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
505-529
0.015
1
8mer
303-329
0.014
0
6mer
396-411
0.004
2
RP11-554D20.2
hsa-miR-146a-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616822
Biotype: sense_intronic
Gene id: ENSG00000273792
Gene Name: RP11-554D20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1031-1053
0.019
1
7mer
178-194
0.006
0
7mer
818-832
0.005
Not Conserved
6mer
1051-1074
0.002
0
FTX
hsa-miR-146a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000430772
Biotype: lincRNA
Gene id: ENSG00000230590
Gene Name: FTX
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
48-65
0.032
1
RP11-417B4.2
hsa-miR-146a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423942
Biotype: antisense
Gene id: ENSG00000230826
Gene Name: RP11-417B4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
586-613
0.024
1
6mer
690-717
0.004
1
6mer
617-633
0.004
1
CTB-96E2.7
hsa-miR-146a-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577850
Biotype: antisense
Gene id: ENSG00000265618
Gene Name: CTB-96E2.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
366-386
0.032
1
RP11-497D6.5
hsa-miR-146a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606686
Biotype: lincRNA
Gene id: ENSG00000272397
Gene Name: RP11-497D6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
436-455
0.015
2
7mer
764-783
0.011
2
6mer
611-637
0.003
1
6mer
2070-2092
0.003
2
SNHG1
hsa-miR-146a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000542112
Biotype: lincRNA
Gene id: ENSG00000255717
Gene Name: SNHG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
749-768
0.032
0
MIR17HG
hsa-miR-146a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000582141
Biotype: retained_intron
Gene id: ENSG00000215417
Gene Name: MIR17HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
700-715
0.032
0
XLOC_011753
hsa-miR-146a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024436
Biotype: transcript isomorph
Gene id: XLOC_011753
Gene Name: XLOC_011753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1152-1175
0.009
4
8mer
4755-4778
0.008
1
8mer
1581-1591
0.005
0
6mer
3389-3410
0.002
1
6mer
5713-5728
0.002
0
6mer
725-735
0.002
1
6mer
2640-2663
0.002
0
6mer
5189-5205
0.001
Not Conserved
6mer
1935-1952
0.001
1
XLOC_013011
hsa-miR-146a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026953
Biotype: transcript isomorph
Gene id: XLOC_013011
Gene Name: XLOC_013011
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
484-504
0.032
0
XLOC_001668
hsa-miR-146a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
975-991
0.020
0
6mer
145-167
0.006
0
6mer
2990-3017
0.006
1
MAMDC2-AS1
hsa-miR-146a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000414515
Biotype: antisense
Gene id: ENSG00000204706
Gene Name: MAMDC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1168-1192
0.020
3
6mer
78-93
0.011
6
RP11-729M20.1
hsa-miR-146a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505680
Biotype: lincRNA
Gene id: ENSG00000251170
Gene Name: RP11-729M20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
205-230
0.024
1
6mer
397-414
0.008
1
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