LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
GRM7-AS3
hsa-miR-146a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000458713
Biotype: lincRNA
Gene id: ENSG00000226258
Gene Name: GRM7-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-227
0.033
1
CTA-390C10.10
hsa-miR-146a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609475
Biotype: sense_intronic
Gene id: ENSG00000272977
Gene Name: CTA-390C10.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2495-2513
0.024
1
6mer
3335-3355
0.008
2
6mer
2582-2608
0.001
2
AC002480.3
hsa-miR-146a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000435127
Biotype: antisense
Gene id: ENSG00000232759
Gene Name: AC002480.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1474-1499
0.024
1
6mer
1964-1991
0.005
4
7mer
1761-1779
0.004
1
AC011298.2
hsa-miR-146a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000407635
Biotype: lincRNA
Gene id: ENSG00000219159
Gene Name: AC011298.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-184
0.027
Not Conserved
6mer
2832-2854
0.002
Not Conserved
6mer
2325-2338
0.002
Not Conserved
6mer
944-958
0.002
0
6mer
1530-1555
0.001
Not Conserved
RP11-48F14.1
hsa-miR-146a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000427914
Biotype: lincRNA
Gene id: ENSG00000224406
Gene Name: RP11-48F14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1691-1708
0.018
0
7mer
974-1000
0.011
1
6mer
570-591
0.004
3
RP11-461O7.1
hsa-miR-146a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567929
Biotype: lincRNA
Gene id: ENSG00000246379
Gene Name: RP11-461O7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
79-101
0.033
4
RP11-318K15.2
hsa-miR-146a-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518552
Biotype: sense_intronic
Gene id: ENSG00000254325
Gene Name: RP11-318K15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-108
0.033
1
RP11-374A4.1
hsa-miR-146a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503488
Biotype: lincRNA
Gene id: ENSG00000249359
Gene Name: RP11-374A4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
694-720
0.023
2
6mer
323-344
0.005
1
6mer
897-920
0.003
1
6mer
2924-2946
0.002
2
6mer
1560-1581
0.001
Not Conserved
TRHDE-AS1
hsa-miR-146a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_026836.1
Biotype: antisense
Gene id: NR_026836.1 (gene)
Gene Name: TRHDE-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2905-2925
0.021
9
6mer
232-253
0.009
6
6mer
586-612
0.003
0
CASC7
hsa-miR-146a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3104-3117
0.007
0
6mer
9238-9259
0.007
8
7mer
4132-4152
0.006
2
6mer
9218-9240
0.005
1
6mer
1053-1073
0.004
6
7mer
5509-5532
0.002
0
6mer
6477-6490
0.002
4
6mer
6230-6243
0.001
1
RP11-617F23.1
hsa-miR-146a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000620791
Biotype: antisense
Gene id: ENSG00000259291
Gene Name: RP11-617F23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1623-1642
0.022
3
7mer
131-149
0.011
1
XLOC_001401
hsa-miR-146a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1811-1833
0.033
0
AC093381.2
hsa-miR-146a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453965
Biotype: lincRNA
Gene id: ENSG00000234308
Gene Name: AC093381.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
140-156
0.033
1
LINC01069
hsa-miR-146a-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_108076.1
Biotype: lincRNA
Gene id: NR_108076.1 (gene)
Gene Name: LINC01069
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-483
0.028
1
6mer
1197-1213
0.003
1
6mer
1149-1168
0.002
0
TTN-AS1
hsa-miR-146a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000604956
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-152
0.033
2
RP11-522N14.2
hsa-miR-146a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539391
Biotype: lincRNA
Gene id: ENSG00000256596
Gene Name: RP11-522N14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1804-1815
0.011
2
6mer
266-286
0.007
0
6mer
275-295
0.006
0
6mer
1448-1468
0.005
1
6mer
1552-1572
0.004
1
CTD-2008L17.2
hsa-miR-146a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000382897
Biotype: lincRNA
Gene id: ENSG00000206129
Gene Name: CTD-2008L17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1799-1823
0.019
1
6mer
2286-2312
0.008
7
7mer
1396-1420
0.005
1
SATB1-AS1
hsa-miR-146a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599762
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-110
0.016
3
6mer
210-234
0.006
5
6mer
438-457
0.006
4
6mer
313-332
0.006
4
RP13-188A5.1
hsa-miR-146a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000452532
Biotype: lincRNA
Gene id: ENSG00000227486
Gene Name: RP13-188A5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
734-754
0.033
1
AC137932.6
hsa-miR-146a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562995
Biotype: antisense
Gene id: ENSG00000261253
Gene Name: AC137932.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
466-487
0.033
1
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