LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
PRNCR1
hsa-miR-146a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_109833.1
Biotype: lincRNA
Gene id: NR_109833.1 (gene)
Gene Name: PRNCR1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10487-10508
0.007
0
8mer
5394-5416
0.004
1
7mer
5383-5396
0.004
0
8mer
10896-10921
0.003
1
7mer
4285-4302
0.002
1
6mer
11454-11471
0.002
1
6mer
3475-3491
0.002
4
6mer
8822-8835
0.002
2
6mer
8991-9012
0.002
0
6mer
1074-1098
0.002
0
6mer
3014-3028
0.002
1
6mer
4099-4120
0.002
0
6mer
9715-9737
0.001
Not Conserved
6mer
2404-2425
0.001
0
DANCR
hsa-miR-146a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000623036
Biotype: lincRNA
Gene id: ENSG00000226950
Gene Name: DANCR
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
582-602
0.034
1
RP11-553L6.2
hsa-miR-146a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000493033
Biotype: antisense
Gene id: ENSG00000241490
Gene Name: RP11-553L6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2831-2854
0.011
3
7mer
674-690
0.008
1
7mer
1772-1797
0.008
1
6mer
2363-2389
0.004
3
6mer
2753-2771
0.003
3
ZNRD1-AS1
hsa-miR-146a-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5014-5040
0.011
0
7mer
8108-8118
0.010
1
6mer
8629-8645
0.004
1
6mer
760-779
0.004
0
6mer
5232-5255
0.003
1
6mer
1989-2005
0.002
0
6mer
8063-8081
0.001
0
XLOC_008528
hsa-miR-146a-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018251
Biotype: transcript isomorph
Gene id: XLOC_008528
Gene Name: XLOC_008528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3840-3860
0.013
0
7mer
2797-2818
0.008
0
7mer
1483-1503
0.005
0
6mer
634-660
0.004
1
6mer
713-730
0.003
0
RP11-504P24.8
hsa-miR-146a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608760
Biotype: lincRNA
Gene id: ENSG00000272645
Gene Name: RP11-504P24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1707-1726
0.024
1
6mer
673-688
0.006
1
6mer
1188-1209
0.004
1
LOC100128885
hsa-miR-146a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3877-3901
0.024
0
6mer
199-226
0.008
0
6mer
2302-2323
0.003
0
C21orf49
hsa-miR-146a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000454365
Biotype: lincRNA
Gene id: ENSG00000205930
Gene Name: C21orf49
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-225
0.034
Not Conserved
CTC-338M12.6
hsa-miR-146a-5p
0.806
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512508
Biotype: antisense
Gene id: ENSG00000250900
Gene Name: CTC-338M12.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
452-472
0.029
7
6mer
292-311
0.005
4
RP11-257I14.1
hsa-miR-146a-5p
0.805
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000422842
Biotype: antisense
Gene id: ENSG00000234173
Gene Name: RP11-257I14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-358
0.031
1
6mer
739-765
0.003
1
RP11-856F16.2
hsa-miR-146a-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000545958
Biotype: antisense
Gene id: ENSG00000256469
Gene Name: RP11-856F16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
146-173
0.034
0
PWAR6
hsa-miR-146a-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000552334
Biotype: lincRNA
Gene id: ENSG00000257151
Gene Name: PWAR6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2519-2539
0.022
1
6mer
259-266
0.004
0
6mer
489-514
0.004
0
6mer
904-918
0.003
1
LINC00607
hsa-miR-146a-5p
0.804
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445174
Biotype: lincRNA
Gene id: ENSG00000235770
Gene Name: LINC00607
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3656-3678
0.030
1
6mer
3224-3238
0.004
3
LOC101926935
hsa-miR-146a-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_110001.1
Biotype: sense
Gene id: NR_110001.1 (gene)
Gene Name: LOC101926935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5095-5116
0.020
0
6mer
5463-5472
0.009
0
7mer
1079-1099
0.003
Not Conserved
6mer
3191-3218
0.002
Not Conserved
XLOC_013010
hsa-miR-146a-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
419-444
0.034
0
RP11-370I10.11
hsa-miR-146a-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618746
Biotype: lincRNA
Gene id: ENSG00000273765
Gene Name: RP11-370I10.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-244
0.034
0
RP11-981G7.1
hsa-miR-146a-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000562242
Biotype: sense_overlapping
Gene id: ENSG00000261451
Gene Name: RP11-981G7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3363-3381
0.019
1
6mer
327-349
0.006
1
6mer
3966-3991
0.004
2
6mer
4338-4363
0.004
1
6mer
3874-3888
0.002
1
AC009303.1
hsa-miR-146a-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585381
Biotype: antisense
Gene id: ENSG00000235066
Gene Name: AC009303.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-362
0.030
2
6mer
180-197
0.004
0
RP11-292D4.2
hsa-miR-146a-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515530
Biotype: antisense
Gene id: ENSG00000248764
Gene Name: RP11-292D4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
473-488
0.033
1
RP11-20I23.8
hsa-miR-146a-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569852
Biotype: antisense
Gene id: ENSG00000269937
Gene Name: RP11-20I23.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-43
0.023
8
6mer
334-351
0.009
10
6mer
1441-1463
0.001
1
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