LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
AC092159.2
hsa-miR-146a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445418
Biotype: antisense
Gene id: ENSG00000233296
Gene Name: AC092159.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1807-1827
0.028
1
6mer
912-930
0.003
1
6mer
240-260
0.002
1
6mer
930-957
0.002
1
XLOC_009474
hsa-miR-146a-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6983-7003
0.005
8
7mer
3009-3031
0.005
4
6mer
7351-7369
0.005
1
6mer
7294-7316
0.004
Not Conserved
7mer
2819-2840
0.004
3
7mer
3859-3880
0.004
1
6mer
3984-4003
0.002
3
6mer
1131-1144
0.002
1
6mer
4376-4396
0.002
1
RP5-1119A7.14
hsa-miR-146a-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000442579
Biotype: lincRNA
Gene id: ENSG00000228719
Gene Name: RP5-1119A7.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4-24
0.035
1
RBFADN
hsa-miR-146a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000562391
Biotype: lincRNA
Gene id: ENSG00000261126
Gene Name: RBFADN
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
814-834
0.030
2
6mer
636-650
0.005
2
CTB-167B5.2
hsa-miR-146a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000585152
Biotype: lincRNA
Gene id: ENSG00000264868
Gene Name: CTB-167B5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
163-188
0.017
0
7mer
2339-2352
0.007
0
6mer
2563-2578
0.004
1
6mer
2006-2031
0.003
1
7mer
1933-1956
0.003
1
RP11-324E6.10
hsa-miR-146a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613543
Biotype: lincRNA
Gene id: ENSG00000274191
Gene Name: RP11-324E6.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
412-433
0.035
1
RP11-370B11.3
hsa-miR-146a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448570
Biotype: lincRNA
Gene id: ENSG00000224549
Gene Name: RP11-370B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-69
0.035
1
XLOC_006107
hsa-miR-146a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014135
Biotype: transcript isomorph
Gene id: XLOC_006107
Gene Name: XLOC_006107
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
281-305
0.035
0
RP11-231D20.2
hsa-miR-146a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520890
Biotype: antisense
Gene id: ENSG00000253408
Gene Name: RP11-231D20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-84
0.034
1
LINC01192
hsa-miR-146a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000470546
Biotype: lincRNA
Gene id: ENSG00000241369
Gene Name: LINC01192
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
414-438
0.019
0
7mer
1252-1266
0.016
0
FLJ42969
hsa-miR-146a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514926
Biotype: lincRNA
Gene id: ENSG00000248599
Gene Name: FLJ42969
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1296-1320
0.034
1
XLOC_012784
hsa-miR-146a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026436
Biotype: transcript isomorph
Gene id: XLOC_012784
Gene Name: XLOC_012784
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HREpiC Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1062-1072
0.034
0
RP11-1E4.1
hsa-miR-146a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000562143
Biotype: antisense
Gene id: ENSG00000260093
Gene Name: RP11-1E4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3498-3525
0.028
1
6mer
504-522
0.003
1
6mer
2192-2198
0.002
0
6mer
1700-1716
0.001
0
RP4-553F4.2
hsa-miR-146a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000441029
Biotype: antisense
Gene id: ENSG00000229188
Gene Name: RP4-553F4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-90
0.034
2
XLOC_007880
hsa-miR-146a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016890
Biotype: transcript isomorph
Gene id: XLOC_007880
Gene Name: XLOC_007880
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-73
0.034
1
AC008132.15
hsa-miR-146a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000611876
Biotype: lincRNA
Gene id: ENSG00000182824
Gene Name: AC008132.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
211-235
0.014
0
6mer
925-940
0.011
0
6mer
925-948
0.009
0
XLOC_006867
hsa-miR-146a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014791
Biotype: transcript isomorph
Gene id: XLOC_006867
Gene Name: XLOC_006867
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1880-1905
0.013
Not Conserved
6mer
1939-1957
0.007
1
6mer
2201-2217
0.007
1
6mer
1607-1625
0.005
1
6mer
1712-1738
0.003
1
VLDLR-AS1
hsa-miR-146a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000599229
Biotype: antisense
Gene id: ENSG00000236404
Gene Name: VLDLR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1028-1049
0.034
11
CAPN10-AS1
hsa-miR-146a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_103792.1
Biotype: lincRNA
Gene id: NR_103792.1 (gene)
Gene Name: CAPN10-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
568-584
0.034
2
ZRANB2-AS2
hsa-miR-146a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000591654
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
661-683
0.020
0
7mer
36-57
0.014
2
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