LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_003387
hsa-miR-146a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006757
Biotype: transcript isomorph
Gene id: XLOC_003387
Gene Name: XLOC_003387
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
377-392
0.036
2
SATB1-AS1
hsa-miR-146a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000456253
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
329-355
0.019
3
6mer
683-702
0.006
4
6mer
558-577
0.006
4
6mer
455-479
0.005
5
RP11-121A8.1
hsa-miR-146a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609522
Biotype: lincRNA
Gene id: ENSG00000272908
Gene Name: RP11-121A8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
296-323
0.015
1
7mer
265-287
0.012
0
6mer
6-20
0.006
0
6mer
1006-1029
0.003
0
RP11-760D2.5
hsa-miR-146a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429367
Biotype: lincRNA
Gene id: ENSG00000233288
Gene Name: RP11-760D2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
276-283
0.031
0
6mer
444-466
0.003
Not Conserved
6mer
2151-2169
0.002
Not Conserved
RP11-61L19.3
hsa-miR-146a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000609094
Biotype: sense_intronic
Gene id: ENSG00000273352
Gene Name: RP11-61L19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
288-313
0.036
1
LINC00703
hsa-miR-146a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454152
Biotype: lincRNA
Gene id: ENSG00000224382
Gene Name: LINC00703
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1009-1023
0.027
0
6mer
455-474
0.005
4
6mer
97-119
0.004
2
LINC00669
hsa-miR-146a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591469
Biotype: lincRNA
Gene id: ENSG00000267374
Gene Name: LINC00669
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1388-1399
0.016
1
8mer
512-527
0.013
3
6mer
32-44
0.007
1
RP11-1109M24.5
hsa-miR-146a-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577956
Biotype: lincRNA
Gene id: ENSG00000264956
Gene Name: RP11-1109M24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
532-550
0.029
0
6mer
678-694
0.004
0
6mer
1370-1386
0.003
0
CTA-941F9.10
hsa-miR-146a-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5286-5300
0.008
1
7mer
6709-6735
0.004
1
6mer
8406-8430
0.002
3
6mer
18906-18932
0.002
2
6mer
9640-9667
0.002
3
6mer
9128-9153
0.002
0
6mer
18311-18335
0.002
1
6mer
13786-13810
0.002
1
6mer
1081-1103
0.002
0
6mer
4132-4153
0.002
Not Conserved
6mer
7490-7514
0.002
0
6mer
2177-2195
0.002
0
6mer
12377-12388
0.002
1
6mer
10114-10132
0.001
0
6mer
5340-5355
0.001
0
6mer
14566-14590
0.001
0
6mer
18409-18436
0.001
1
RP11-440L14.3
hsa-miR-146a-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000568585
Biotype: lincRNA
Gene id: ENSG00000260262
Gene Name: RP11-440L14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
309-334
0.035
1
AC009303.1
hsa-miR-146a-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413179
Biotype: antisense
Gene id: ENSG00000235066
Gene Name: AC009303.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-149
0.035
2
RP11-133K1.7
hsa-miR-146a-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568093
Biotype: sense_intronic
Gene id: ENSG00000260648
Gene Name: RP11-133K1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3774-3795
0.028
0
6mer
3892-3915
0.005
1
6mer
2965-2986
0.002
1
CHKB-CPT1B
hsa-miR-146a-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_027928.2
Biotype: sense
Gene id: NR_027928.2 (gene)
Gene Name: CHKB-CPT1B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
490-503
0.035
5
RP11-582J16.4
hsa-miR-146a-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514980
Biotype: antisense
Gene id: ENSG00000251034
Gene Name: RP11-582J16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4013-4035
0.035
3
LOC100506639
hsa-miR-146a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_102752.1
Biotype: sense
Gene id: NR_102752.1 (gene)
Gene Name: LOC100506639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
517-538
0.035
0
AP001626.1
hsa-miR-146a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000419628
Biotype: lincRNA
Gene id: ENSG00000225431
Gene Name: AP001626.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-169
0.030
1
6mer
88-110
0.003
Not Conserved
6mer
167-180
0.003
Not Conserved
LOC285692
hsa-miR-146a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_027112.2
Biotype: sense
Gene id: NR_027112.2 (gene)
Gene Name: LOC285692
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-29
0.027
2
7mer
1582-1602
0.008
Not Conserved
NEAT1
hsa-miR-146a-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1298-1318
0.009
4
8mer
11349-11371
0.007
1
7mer
8706-8723
0.004
0
6mer
22401-22423
0.003
1
7mer
6494-6517
0.003
1
7mer
19425-19447
0.003
1
6mer
7622-7646
0.002
3
6mer
14318-14345
0.002
2
6mer
9470-9484
0.001
0
RP11-67L2.2
hsa-miR-146a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000610128
Biotype: lincRNA
Gene id: ENSG00000273033
Gene Name: RP11-67L2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1032-1049
0.012
0
8mer
356-362
0.009
0
6mer
258-282
0.007
3
6mer
435-457
0.003
0
6mer
4035-4056
0.002
1
6mer
3779-3799
0.002
1
RP5-1004I9.1
hsa-miR-146a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_027090.1
Biotype: lincRNA
Gene id: NR_027090.1 (gene)
Gene Name: RP5-1004I9.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1289-1315
0.027
0
6mer
207-224
0.004
1
6mer
396-411
0.004
0
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