LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
RP11-24I21.1
hsa-miR-146a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503100
Biotype: lincRNA
Gene id: ENSG00000248210
Gene Name: RP11-24I21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2148-2167
0.025
0
7mer
701-718
0.009
0
6mer
312-336
0.003
0
RP11-428J1.4
hsa-miR-146a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606227
Biotype: lincRNA
Gene id: ENSG00000271978
Gene Name: RP11-428J1.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2769-2795
0.035
1
6mer
1887-1912
0.002
1
C21orf49
hsa-miR-146a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000612326
Biotype: lincRNA
Gene id: ENSG00000205930
Gene Name: C21orf49
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
207-228
0.035
Not Conserved
6mer
789-801
0.003
0
RP11-651P23.5
hsa-miR-146a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000471176
Biotype: lincRNA
Gene id: ENSG00000242791
Gene Name: RP11-651P23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
489-510
0.034
0
6mer
310-335
0.004
1
RP5-1070A16.1
hsa-miR-146a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418344
Biotype: lincRNA
Gene id: ENSG00000226053
Gene Name: RP5-1070A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2023-2045
0.020
1
7mer
2012-2025
0.008
1
7mer
1117-1141
0.006
0
6mer
1297-1324
0.002
0
6mer
1154-1170
0.001
0
XLOC_000290
hsa-miR-146a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001023
Biotype: transcript isomorph
Gene id: XLOC_000290
Gene Name: XLOC_000290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-89
0.037
1
XLOC_013680
hsa-miR-146a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027845
Biotype: transcript isomorph
Gene id: XLOC_013680
Gene Name: XLOC_013680
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1872-1898
0.026
0
6mer
243-260
0.004
1
6mer
432-447
0.003
0
6mer
984-1011
0.002
1
6mer
1062-1077
0.001
0
RP11-2C24.7
hsa-miR-146a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000621583
Biotype: lincRNA
Gene id: ENSG00000274678
Gene Name: RP11-2C24.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
243-259
0.037
1
RP11-728G15.1
hsa-miR-146a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544339
Biotype: antisense
Gene id: ENSG00000256008
Gene Name: RP11-728G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
433-453
0.037
1
LINC00641
hsa-miR-146a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555379
Biotype: retained_intron
Gene id: ENSG00000258441
Gene Name: LINC00641
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3098-3121
0.012
3
8mer
3988-4013
0.011
1
6mer
484-497
0.004
1
6mer
4952-4970
0.004
0
6mer
765-784
0.004
2
6mer
3597-3622
0.002
2
XLOC_008407
hsa-miR-146a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018132
Biotype: transcript isomorph
Gene id: XLOC_008407
Gene Name: XLOC_008407
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
66-79
0.037
2
RP11-300M24.1
hsa-miR-146a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605741
Biotype: lincRNA
Gene id: ENSG00000227455
Gene Name: RP11-300M24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1266-1280
0.017
1
8mer
1702-1727
0.011
0
6mer
3267-3282
0.005
1
6mer
403-426
0.004
1
XLOC_008014
hsa-miR-146a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017432
Biotype: transcript isomorph
Gene id: XLOC_008014
Gene Name: XLOC_008014
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
514-533
0.012
2
6mer
67-83
0.011
7
6mer
18-41
0.008
7
6mer
146-167
0.005
1
RP3-416H24.4
hsa-miR-146a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547174
Biotype: antisense
Gene id: ENSG00000258253
Gene Name: RP3-416H24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
464-477
0.036
1
XLOC_002227
hsa-miR-146a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004353
Biotype: transcript isomorph
Gene id: XLOC_002227
Gene Name: XLOC_002227
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2053-2073
0.027
1
7mer
792-814
0.006
0
6mer
1956-1979
0.004
1
AC008063.3
hsa-miR-146a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432251
Biotype: lincRNA
Gene id: ENSG00000233397
Gene Name: AC008063.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
576-597
0.033
2
6mer
539-553
0.003
Not Conserved
MUC19
hsa-miR-146a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546043
Biotype: retained_intron
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-487
0.030
1
6mer
485-507
0.006
2
XLOC_002543
hsa-miR-146a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004629
Biotype: transcript isomorph
Gene id: XLOC_002543
Gene Name: XLOC_002543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2909-2930
0.016
1
6mer
41-64
0.007
1
6mer
342-362
0.005
1
6mer
210-226
0.003
0
6mer
694-720
0.002
0
6mer
1225-1243
0.001
1
6mer
1773-1798
0.001
1
6mer
1698-1717
0.000
0
LINC00886
hsa-miR-146a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472943
Biotype: lincRNA
Gene id: ENSG00000240875
Gene Name: LINC00886
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
869-889
0.016
1
7mer
2205-2227
0.009
2
7mer
1843-1866
0.007
4
6mer
1051-1068
0.003
4
6mer
1255-1280
0.001
0
RP5-1056H1.2
hsa-miR-146a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000619370
Biotype: lincRNA
Gene id: ENSG00000278192
Gene Name: RP5-1056H1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
328-349
0.018
2
8mer
293-318
0.015
0
6mer
748-768
0.003
3
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