LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
CTD-2061E9.1
hsa-miR-146a-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512849
Biotype: lincRNA
Gene id: ENSG00000249785
Gene Name: CTD-2061E9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-361
0.038
0
RP11-63B19.1
hsa-miR-146a-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427173
Biotype: lincRNA
Gene id: ENSG00000236720
Gene Name: RP11-63B19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
369-394
0.025
4
7mer
745-763
0.010
0
6mer
1213-1232
0.003
1
XLOC_012997
hsa-miR-146a-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026934
Biotype: transcript isomorph
Gene id: XLOC_012997
Gene Name: XLOC_012997
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1514-1535
0.015
1
6mer
691-704
0.010
1
6mer
1514-1541
0.009
1
6mer
1047-1058
0.004
0
XLOC_002716
hsa-miR-146a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005549
Biotype: transcript isomorph
Gene id: XLOC_002716
Gene Name: XLOC_002716
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-46
0.021
0
7mer
974-994
0.013
1
6mer
722-733
0.004
0
XLOC_009724
hsa-miR-146a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021112
Biotype: transcript isomorph
Gene id: XLOC_009724
Gene Name: XLOC_009724
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-41
0.020
3
7mer
200-227
0.018
1
C21orf49
hsa-miR-146a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000477513
Biotype: lincRNA
Gene id: ENSG00000205930
Gene Name: C21orf49
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-201
0.038
Not Conserved
ZFP91-CNTF
hsa-miR-146a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_024091.1
Biotype: sense
Gene id: NR_024091.1 (gene)
Gene Name: ZFP91-CNTF
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3294-3310
0.036
0
6mer
2247-2274
0.002
3
XLOC_001935
hsa-miR-146a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005057
Biotype: transcript isomorph
Gene id: XLOC_001935
Gene Name: XLOC_001935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
638-662
0.038
0
RP11-543E8.1
hsa-miR-146a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412647
Biotype: lincRNA
Gene id: ENSG00000232964
Gene Name: RP11-543E8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
168-183
0.026
1
6mer
50-63
0.012
2
SATB1-AS1
hsa-miR-146a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000595250
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
181-207
0.016
3
6mer
410-429
0.006
4
6mer
479-498
0.006
4
6mer
307-331
0.005
5
6mer
101-128
0.003
0
XLOC_006792
hsa-miR-146a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014694
Biotype: transcript isomorph
Gene id: XLOC_006792
Gene Name: XLOC_006792
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
262-281
0.038
1
RP11-193M21.1
hsa-miR-146a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000602731
Biotype: lincRNA
Gene id: ENSG00000269916
Gene Name: RP11-193M21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
382-405
0.038
0
LOC100507387
hsa-miR-146a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_038402.1
Biotype: sense
Gene id: NR_038402.1 (gene)
Gene Name: LOC100507387
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
474-493
0.035
0
6mer
374-400
0.002
Not Conserved
AC005592.3
hsa-miR-146a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000566527
Biotype: lincRNA
Gene id: ENSG00000261757
Gene Name: AC005592.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1378-1402
0.025
2
6mer
304-321
0.006
1
6mer
1130-1151
0.006
1
PROX1-AS1
hsa-miR-146a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609394
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-243
0.038
1
CTC-457E21.1
hsa-miR-146a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000562262
Biotype: sense_intronic
Gene id: ENSG00000260599
Gene Name: CTC-457E21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1308-1330
0.020
0
7mer
3191-3210
0.011
0
6mer
2680-2698
0.004
Not Conserved
6mer
1569-1594
0.002
Not Conserved
AC073043.1
hsa-miR-146a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000593967
Biotype: lincRNA
Gene id: ENSG00000232732
Gene Name: AC073043.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
427-450
0.032
3
6mer
592-614
0.006
3
LINC00499
hsa-miR-146a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502757
Biotype: lincRNA
Gene id: ENSG00000251372
Gene Name: LINC00499
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
489-510
0.037
1
CTD-2541M15.3
hsa-miR-146a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607368
Biotype: lincRNA
Gene id: ENSG00000271743
Gene Name: CTD-2541M15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
557-580
0.030
1
6mer
266-286
0.004
0
6mer
183-199
0.004
1
AFAP1-AS1
hsa-miR-146a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608442
Biotype: antisense
Gene id: ENSG00000272620
Gene Name: AFAP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
158-184
0.017
1
7mer
1139-1160
0.007
0
8mer
1020-1033
0.005
1
6mer
904-924
0.002
1
6mer
6013-6035
0.002
1
6mer
1454-1472
0.002
1
6mer
2137-2156
0.002
1
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