LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
RP11-682N22.1
hsa-miR-146a-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_038948.1
Biotype: sense
Gene id: NR_038948.1 (gene)
Gene Name: RP11-682N22.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1071-1082
0.011
1
7mer
1281-1306
0.010
1
6mer
509-524
0.009
7
6mer
60-84
0.006
1
6mer
729-746
0.003
1
XLOC_008910
hsa-miR-146a-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00019001
Biotype: transcript isomorph
Gene id: XLOC_008910
Gene Name: XLOC_008910
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-244
0.039
1
RP11-597K23.2
hsa-miR-146a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558082
Biotype: lincRNA
Gene id: ENSG00000259518
Gene Name: RP11-597K23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1286-1313
0.021
1
7mer
2088-2113
0.019
0
RP11-145P16.3
hsa-miR-146a-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000605703
Biotype: sense_intronic
Gene id: ENSG00000270523
Gene Name: RP11-145P16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
260-276
0.039
1
CTD-2534J5.1
hsa-miR-146a-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517640
Biotype: lincRNA
Gene id: ENSG00000253783
Gene Name: CTD-2534J5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
460-481
0.039
1
XLOC_011567
hsa-miR-146a-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023771
Biotype: transcript isomorph
Gene id: XLOC_011567
Gene Name: XLOC_011567
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
534-558
0.035
1
6mer
1236-1255
0.004
1
RP11-760D2.1
hsa-miR-146a-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436042
Biotype: lincRNA
Gene id: ENSG00000225488
Gene Name: RP11-760D2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
623-643
0.023
0
6mer
588-606
0.016
1
RP11-544I20.2
hsa-miR-146a-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000359491
Biotype: antisense
Gene id: ENSG00000214770
Gene Name: RP11-544I20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1011-1033
0.039
1
CTD-2143L24.1
hsa-miR-146a-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511616
Biotype: lincRNA
Gene id: ENSG00000249781
Gene Name: CTD-2143L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4-29
0.031
2
7mer
1582-1602
0.008
Not Conserved
AC015849.16
hsa-miR-146a-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000604647
Biotype: lincRNA
Gene id: ENSG00000270977
Gene Name: AC015849.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-91
0.039
1
OPCML-IT1
hsa-miR-146a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533859
Biotype: sense_intronic
Gene id: ENSG00000254896
Gene Name: OPCML-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-49
0.039
Not Conserved
RP11-44F14.8
hsa-miR-146a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571340
Biotype: lincRNA
Gene id: ENSG00000262714
Gene Name: RP11-44F14.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
952-976
0.020
1
6mer
566-584
0.010
1
6mer
847-866
0.005
0
6mer
582-604
0.005
0
RP5-1004I9.1
hsa-miR-146a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000377121
Biotype: lincRNA
Gene id: ENSG00000204684
Gene Name: RP5-1004I9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1355-1381
0.027
0
6mer
189-206
0.004
1
6mer
930-957
0.004
1
6mer
378-393
0.003
0
RP11-572M11.3
hsa-miR-146a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000490139
Biotype: lincRNA
Gene id: ENSG00000243795
Gene Name: RP11-572M11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1159-1176
0.026
5
7mer
294-311
0.012
1
XLOC_007103
hsa-miR-146a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015026
Biotype: transcript isomorph
Gene id: XLOC_007103
Gene Name: XLOC_007103
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-84
0.027
0
7mer
778-804
0.011
Not Conserved
RP11-415J8.7
hsa-miR-146a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602618
Biotype: lincRNA
Gene id: ENSG00000270115
Gene Name: RP11-415J8.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-98
0.038
1
RP11-613D13.5
hsa-miR-146a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499066
Biotype: antisense
Gene id: ENSG00000246250
Gene Name: RP11-613D13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-85
0.034
1
6mer
1856-1874
0.004
1
RP11-358B23.5
hsa-miR-146a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592536
Biotype: antisense
Gene id: ENSG00000267758
Gene Name: RP11-358B23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
10-28
0.038
2
XLOC_004139
hsa-miR-146a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008635
Biotype: transcript isomorph
Gene id: XLOC_004139
Gene Name: XLOC_004139
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
190-208
0.038
1
RP11-747H7.3
hsa-miR-146a-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000565058
Biotype: sense_intronic
Gene id: ENSG00000260711
Gene Name: RP11-747H7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2240-2257
0.010
2
7mer
1748-1770
0.006
1
7mer
357-372
0.005
1
7mer
2437-2462
0.004
2
6mer
67-84
0.004
0
6mer
6604-6622
0.003
1
6mer
395-408
0.003
1
7mer
1649-1669
0.002
2
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