LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
SATB1-AS1
hsa-miR-146a-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598390
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-110
0.016
3
8mer
366-385
0.007
0
6mer
210-234
0.006
5
6mer
675-683
0.006
2
6mer
313-332
0.006
4
RP4-717I23.3
hsa-miR-146a-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451302
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
417-436
0.028
2
6mer
73-90
0.012
8
RP11-20B24.5
hsa-miR-146a-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580782
Biotype: antisense
Gene id: ENSG00000265845
Gene Name: RP11-20B24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-198
0.041
2
XLOC_003209
hsa-miR-146a-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006601
Biotype: transcript isomorph
Gene id: XLOC_003209
Gene Name: XLOC_003209
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3231-3254
0.029
0
6mer
350-368
0.008
7
8mer
998-1023
0.004
0
RP11-651P23.5
hsa-miR-146a-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000323689
Biotype: lincRNA
Gene id: ENSG00000242791
Gene Name: RP11-651P23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-134
0.041
0
AC003973.4
hsa-miR-146a-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596778
Biotype: lincRNA
Gene id: ENSG00000269504
Gene Name: AC003973.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1090-1104
0.040
0
RP11-213G6.2
hsa-miR-146a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520375
Biotype: lincRNA
Gene id: ENSG00000254002
Gene Name: RP11-213G6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
362-377
0.021
0
7mer
15-37
0.019
1
XLOC_009080
hsa-miR-146a-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019074
Biotype: transcript isomorph
Gene id: XLOC_009080
Gene Name: XLOC_009080
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1951-1972
0.027
1
7mer
1249-1275
0.009
1
6mer
2223-2247
0.003
0
6mer
1629-1651
0.002
1
RP11-442N1.2
hsa-miR-146a-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000563865
Biotype: lincRNA
Gene id: ENSG00000261763
Gene Name: RP11-442N1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3560-3566
0.029
2
6mer
33-60
0.007
1
6mer
797-810
0.002
1
6mer
1477-1492
0.002
4
RP11-507K2.2
hsa-miR-146a-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555444
Biotype: antisense
Gene id: ENSG00000258983
Gene Name: RP11-507K2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-45
0.040
1
RP11-156E6.1
hsa-miR-146a-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000560400
Biotype: sense_overlapping
Gene id: ENSG00000259623
Gene Name: RP11-156E6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2103-2123
0.024
2
7mer
1978-2003
0.005
1
6mer
57-76
0.005
1
6mer
2231-2250
0.004
2
6mer
767-791
0.003
1
XLOC_012138
hsa-miR-146a-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025860
Biotype: transcript isomorph
Gene id: XLOC_012138
Gene Name: XLOC_012138
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
852-866
0.015
0
6mer
146-168
0.014
0
6mer
751-776
0.011
0
RP11-166D19.1
hsa-miR-146a-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524376
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-157
0.036
0
6mer
317-332
0.004
0
XLOC_012824
hsa-miR-146a-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026498
Biotype: transcript isomorph
Gene id: XLOC_012824
Gene Name: XLOC_012824
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-321
0.040
4
RP11-575F12.2
hsa-miR-146a-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541419
Biotype: lincRNA
Gene id: ENSG00000256001
Gene Name: RP11-575F12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-109
0.040
1
RP11-147C23.1
hsa-miR-146a-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624750
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-447
0.036
3
6mer
375-397
0.004
2
RP5-951N9.2
hsa-miR-146a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537181
Biotype: sense_intronic
Gene id: ENSG00000267285
Gene Name: RP5-951N9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
550-568
0.021
1
9mer
350-366
0.019
0
RP11-473O4.5
hsa-miR-146a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524100
Biotype: antisense
Gene id: ENSG00000254317
Gene Name: RP11-473O4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
483-508
0.029
0
7mer
668-686
0.007
1
6mer
436-449
0.004
1
RP11-149I23.3
hsa-miR-146a-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000437032
Biotype: antisense
Gene id: ENSG00000232110
Gene Name: RP11-149I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
539-564
0.039
0
RP11-147C23.1
hsa-miR-146a-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623830
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-317
0.031
3
6mer
487-502
0.005
2
6mer
245-267
0.003
2
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