LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
RP3-466P17.1
hsa-miR-146a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000603994
Biotype: lincRNA
Gene id: ENSG00000270638
Gene Name: RP3-466P17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1455-1479
0.036
1
8mer
263-285
0.006
0
XX-C2158C6.1
hsa-miR-146a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000426839
Biotype: lincRNA
Gene id: ENSG00000230423
Gene Name: XX-C2158C6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-85
0.042
1
DOCK9-AS2
hsa-miR-146a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000562781
Biotype: antisense
Gene id: ENSG00000260992
Gene Name: DOCK9-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
600-616
0.042
1
RP11-981G7.3
hsa-miR-146a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520494
Biotype: lincRNA
Gene id: ENSG00000253678
Gene Name: RP11-981G7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
287-313
0.042
0
BACH1-IT3
hsa-miR-146a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000429843
Biotype: sense_intronic
Gene id: ENSG00000234293
Gene Name: BACH1-IT3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-381
0.042
0
RP11-238K6.1
hsa-miR-146a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518973
Biotype: lincRNA
Gene id: ENSG00000253288
Gene Name: RP11-238K6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3869-3885
0.018
1
7mer
3795-3819
0.008
1
7mer
3416-3431
0.006
0
7mer
3132-3150
0.004
0
6mer
321-340
0.003
1
6mer
495-511
0.002
Not Conserved
RP11-285E9.5
hsa-miR-146a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584075
Biotype: lincRNA
Gene id: ENSG00000265121
Gene Name: RP11-285E9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-205
0.042
2
DKFZp434J0226
hsa-miR-146a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596066
Biotype: retained_intron
Gene id: ENSG00000268460
Gene Name: DKFZp434J0226
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
326-349
0.028
1
7mer
838-859
0.006
0
8mer
1924-1944
0.003
1
6mer
2587-2605
0.002
1
6mer
1911-1923
0.002
1
CTD-2530H12.4
hsa-miR-146a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527803
Biotype: antisense
Gene id: ENSG00000255326
Gene Name: CTD-2530H12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-464
0.042
2
XLOC_001200
hsa-miR-146a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001819
Biotype: transcript isomorph
Gene id: XLOC_001200
Gene Name: XLOC_001200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
879-891
0.022
0
7mer
2174-2194
0.008
2
6mer
201-219
0.006
2
6mer
1193-1209
0.003
1
6mer
7165-7189
0.002
1
6mer
2869-2890
0.001
1
RP11-216M21.7
hsa-miR-146a-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3105-3124
0.035
0
6mer
1346-1371
0.006
0
XLOC_004712
hsa-miR-146a-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009219
Biotype: transcript isomorph
Gene id: XLOC_004712
Gene Name: XLOC_004712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-74
0.021
1
7mer
2147-2172
0.008
1
6mer
27-52
0.005
1
6mer
289-313
0.003
1
6mer
1835-1856
0.002
1
7mer
2053-2069
0.001
0
6mer
1740-1754
0.001
1
XLOC_013461
hsa-miR-146a-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028105
Biotype: transcript isomorph
Gene id: XLOC_013461
Gene Name: XLOC_013461
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-30
0.041
5
XLOC_009781
hsa-miR-146a-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020448
Biotype: transcript isomorph
Gene id: XLOC_009781
Gene Name: XLOC_009781
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
305-322
0.041
1
XLOC_002309
hsa-miR-146a-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004436
Biotype: transcript isomorph
Gene id: XLOC_002309
Gene Name: XLOC_002309
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-484
0.041
1
ZFHX4-AS1
hsa-miR-146a-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521894
Biotype: antisense
Gene id: ENSG00000253661
Gene Name: ZFHX4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
268-293
0.019
0
7mer
213-234
0.014
2
6mer
574-592
0.004
1
6mer
221-242
0.004
3
C12orf36
hsa-miR-146a-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000318426
Biotype: lincRNA
Gene id: ENSG00000180861
Gene Name: C12orf36
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1406-1426
0.028
3
6mer
1941-1965
0.004
4
6mer
2385-2403
0.003
1
6mer
2644-2671
0.003
1
6mer
2568-2581
0.002
Not Conserved
XLOC_012044
hsa-miR-146a-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024764
Biotype: transcript isomorph
Gene id: XLOC_012044
Gene Name: XLOC_012044
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2180-2201
0.041
0
MAMDC2-AS1
hsa-miR-146a-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000610059
Biotype: antisense
Gene id: ENSG00000204706
Gene Name: MAMDC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
295-311
0.041
3
AC008269.2
hsa-miR-146a-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438070
Biotype: lincRNA
Gene id: ENSG00000229321
Gene Name: AC008269.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
52-64
0.041
1
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