LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_000980
hsa-miR-146a-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000616
Biotype: transcript isomorph
Gene id: XLOC_000980
Gene Name: XLOC_000980
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
767-781
0.036
4
6mer
795-820
0.004
0
6mer
1147-1171
0.003
1
RP11-728E14.3
hsa-miR-146a-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577309
Biotype: lincRNA
Gene id: ENSG00000265043
Gene Name: RP11-728E14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
262-282
0.039
1
6mer
2779-2795
0.004
0
RP11-166D19.1
hsa-miR-146a-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528986
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-157
0.035
0
6mer
317-332
0.004
0
6mer
2746-2759
0.003
2
LINC00346
hsa-miR-146a-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000538077
Biotype: lincRNA
Gene id: ENSG00000255874
Gene Name: LINC00346
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
586-604
0.017
1
7mer
602-614
0.011
1
8mer
6115-6131
0.011
0
8mer
2417-2439
0.003
Not Conserved
CTD-2170G1.2
hsa-miR-146a-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506550
Biotype: lincRNA
Gene id: ENSG00000251575
Gene Name: CTD-2170G1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1233-1251
0.040
1
6mer
445-456
0.003
1
XLOC_003268
hsa-miR-146a-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005837
Biotype: transcript isomorph
Gene id: XLOC_003268
Gene Name: XLOC_003268
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2533-2539
0.032
2
6mer
31-58
0.006
1
6mer
795-808
0.002
1
6mer
1475-1490
0.002
4
XLOC_006768
hsa-miR-146a-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014669
Biotype: transcript isomorph
Gene id: XLOC_006768
Gene Name: XLOC_006768
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
385-409
0.043
6
AC079466.1
hsa-miR-146a-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4009-4030
0.042
1
SATB1-AS1
hsa-miR-146a-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000616514
Biotype: retained_intron
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
623-649
0.023
3
7mer
284-304
0.011
2
6mer
749-773
0.007
5
6mer
413-438
0.001
Not Conserved
LOC101054525
hsa-miR-146a-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_073144.1
Biotype: antisense
Gene id: NR_073144.1 (gene)
Gene Name: LOC101054525
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
652-671
0.025
0
7mer
285-299
0.009
2
7mer
286-312
0.009
2
C21orf67
hsa-miR-146a-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000397841
Biotype: lincRNA
Gene id: ENSG00000183250
Gene Name: C21orf67
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1464-1479
0.036
1
7mer
553-580
0.006
0
6mer
1095-1116
0.001
Not Conserved
RP11-557L19.1
hsa-miR-146a-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606959
Biotype: lincRNA
Gene id: ENSG00000272002
Gene Name: RP11-557L19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
265-283
0.042
1
RP11-309H21.3
hsa-miR-146a-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563320
Biotype: lincRNA
Gene id: ENSG00000261642
Gene Name: RP11-309H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1621-1640
0.026
0
7mer
1735-1756
0.010
0
6mer
1120-1133
0.006
0
RP11-281N10.1
hsa-miR-146a-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517848
Biotype: lincRNA
Gene id: ENSG00000253287
Gene Name: RP11-281N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
72-86
0.042
1
XLOC_002858
hsa-miR-146a-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006256
Biotype: transcript isomorph
Gene id: XLOC_002858
Gene Name: XLOC_002858
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-164
0.042
1
C21orf49
hsa-miR-146a-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000382375
Biotype: lincRNA
Gene id: ENSG00000205930
Gene Name: C21orf49
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
268-289
0.033
Not Conserved
6mer
1368-1391
0.003
1
6mer
1916-1934
0.003
0
6mer
1037-1060
0.002
1
6mer
1088-1112
0.002
1
XLOC_004989
hsa-miR-146a-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010469
Biotype: transcript isomorph
Gene id: XLOC_004989
Gene Name: XLOC_004989
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-438
0.035
1
6mer
673-689
0.004
1
6mer
367-394
0.004
3
AC139099.5
hsa-miR-146a-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574098
Biotype: lincRNA
Gene id: ENSG00000262094
Gene Name: AC139099.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2223-2244
0.026
0
7mer
394-411
0.009
0
6mer
413-432
0.007
1
LINC01010
hsa-miR-146a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431422
Biotype: lincRNA
Gene id: ENSG00000236700
Gene Name: LINC01010
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1346-1373
0.042
1
XLOC_011484
hsa-miR-146a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023685
Biotype: transcript isomorph
Gene id: XLOC_011484
Gene Name: XLOC_011484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
422-444
0.042
0
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