LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-146a-5p


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Gene
miRNA
Score
DIANA Links
RP5-933B4.1
hsa-miR-146a-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437080
Biotype: lincRNA
Gene id: ENSG00000224326
Gene Name: RP5-933B4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3-22
0.044
2
LINC00404
hsa-miR-146a-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000418660
Biotype: lincRNA
Gene id: ENSG00000229520
Gene Name: LINC00404
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
377-397
0.044
1
XLOC_012852
hsa-miR-146a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026210
Biotype: transcript isomorph
Gene id: XLOC_012852
Gene Name: XLOC_012852
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2671-2692
0.044
1
RP11-815J21.2
hsa-miR-146a-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561409
Biotype: antisense
Gene id: ENSG00000259375
Gene Name: RP11-815J21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
548-567
0.044
2
AC098973.1
hsa-miR-146a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432163
Biotype: lincRNA
Gene id: ENSG00000229243
Gene Name: AC098973.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-209
0.018
1
7mer
374-395
0.010
2
7mer
2692-2716
0.009
1
6mer
2785-2808
0.005
0
6mer
1642-1662
0.002
1
RP11-575I8.1
hsa-miR-146a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000562922
Biotype: lincRNA
Gene id: ENSG00000260390
Gene Name: RP11-575I8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
424-445
0.015
1
8mer+wobble
623-648
0.015
4
7mer
1371-1388
0.006
1
6mer
402-426
0.004
1
6mer
165-174
0.004
1
CTA-544A11.1
hsa-miR-146a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10308-10316
0.018
1
7mer
8785-8810
0.008
1
7mer
6549-6564
0.005
1
6mer
6331-6356
0.002
2
6mer
9988-10007
0.002
3
6mer
3487-3508
0.002
2
6mer
5906-5930
0.002
0
6mer
5247-5272
0.002
1
6mer
3881-3905
0.002
3
7mer
3896-3923
0.001
1
6mer
9800-9826
0.001
1
RP11-142C4.6
hsa-miR-146a-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533954
Biotype: antisense
Gene id: ENSG00000255240
Gene Name: RP11-142C4.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2362-2382
0.041
1
6mer
2638-2663
0.003
0
RP11-541G9.1
hsa-miR-146a-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552238
Biotype: lincRNA
Gene id: ENSG00000258131
Gene Name: RP11-541G9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-347
0.044
1
RP11-579O24.3
hsa-miR-146a-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582080
Biotype: sense_intronic
Gene id: ENSG00000263938
Gene Name: RP11-579O24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
512-535
0.044
2
XLOC_010288
hsa-miR-146a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021525
Biotype: transcript isomorph
Gene id: XLOC_010288
Gene Name: XLOC_010288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
242-263
0.015
1
7mer
1021-1044
0.011
1
6mer
21-47
0.010
1
6mer
2049-2074
0.004
0
6mer
472-495
0.003
Not Conserved
RP11-626I20.3
hsa-miR-146a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550185
Biotype: lincRNA
Gene id: ENSG00000257762
Gene Name: RP11-626I20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-380
0.043
5
XLOC_001671
hsa-miR-146a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003872
Biotype: transcript isomorph
Gene id: XLOC_001671
Gene Name: XLOC_001671
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5203-5224
0.024
0
8mer
8318-8339
0.008
Not Conserved
7mer
9313-9332
0.007
0
7mer
5787-5807
0.004
Not Conserved
AF131217.1
hsa-miR-146a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000433310
Biotype: lincRNA
Gene id: ENSG00000232855
Gene Name: AF131217.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5905-5931
0.022
0
7mer
3174-3193
0.007
6
6mer
30-47
0.006
2
6mer
2384-2407
0.003
4
6mer
2608-2624
0.002
1
6mer
4379-4397
0.002
2
6mer
3213-3235
0.002
1
RP11-429B14.4
hsa-miR-146a-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567484
Biotype: lincRNA
Gene id: ENSG00000261478
Gene Name: RP11-429B14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
839-860
0.043
1
RP11-142C4.6
hsa-miR-146a-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033853.2
Biotype: antisense
Gene id: NR_033853.2 (gene)
Gene Name: RP11-142C4.6
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2362-2382
0.043
1
RP11-479J7.2
hsa-miR-146a-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425271
Biotype: lincRNA
Gene id: ENSG00000229588
Gene Name: RP11-479J7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-374
0.037
0
6mer
143-158
0.006
3
RP11-88I18.2
hsa-miR-146a-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000590767
Biotype: antisense
Gene id: ENSG00000233178
Gene Name: RP11-88I18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
335-358
0.039
2
6mer
682-704
0.004
3
RP11-411K7.1
hsa-miR-146a-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431554
Biotype: lincRNA
Gene id: ENSG00000236740
Gene Name: RP11-411K7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
738-754
0.019
1
7mer
97-113
0.010
2
6mer
11-30
0.005
2
7mer
1574-1590
0.004
Not Conserved
6mer
1081-1106
0.003
2
6mer
1118-1142
0.001
3
RP11-108M9.6
hsa-miR-146a-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606899
Biotype: lincRNA
Gene id: ENSG00000272426
Gene Name: RP11-108M9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-146a-5p
Sequence: ugagaacugaauuccauggguu
MirBase ID: MIMAT0000449
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13-38
0.043
0
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