LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
RP11-500K19.1
hsa-miR-145-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000490647
Biotype: lincRNA
Gene id: ENSG00000243593
Gene Name: RP11-500K19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-124
0.025
3
RP4-539M6.14
hsa-miR-145-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000610737
Biotype: antisense
Gene id: ENSG00000181123
Gene Name: RP4-539M6.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
943-961
0.021
1
6mer
861-869
0.004
2
AC137932.6
hsa-miR-145-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565667
Biotype: antisense
Gene id: ENSG00000261253
Gene Name: AC137932.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-502
0.017
1
7mer
635-657
0.007
0
LINC00683
hsa-miR-145-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579781
Biotype: lincRNA
Gene id: ENSG00000266256
Gene Name: LINC00683
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1258-1278
0.015
1
7mer
1854-1876
0.003
1
6mer
708-727
0.003
1
6mer
2059-2086
0.002
2
7mer
1347-1373
0.001
0
XLOC_012257
hsa-miR-145-5p
0.700
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025439
Biotype: transcript isomorph
Gene id: XLOC_012257
Gene Name: XLOC_012257
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
554-569
0.025
0
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