LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
RP3-399L15.3
hsa-miR-145-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000519104
Biotype: antisense
Gene id: ENSG00000228624
Gene Name: RP3-399L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
371-381
0.025
1
RP11-436I24.1
hsa-miR-145-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027113.2
Biotype: antisense
Gene id: NR_027113.2 (gene)
Gene Name: RP11-436I24.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
910-930
0.021
3
6mer
1273-1290
0.004
0
XLOC_008665
hsa-miR-145-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018385
Biotype: transcript isomorph
Gene id: XLOC_008665
Gene Name: XLOC_008665
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-171
0.025
1
LINC00926
hsa-miR-145-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000501726
Biotype: lincRNA
Gene id: ENSG00000247982
Gene Name: LINC00926
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1940-1959
0.015
1
7mer
752-765
0.004
0
6mer
2355-2372
0.004
2
6mer
857-874
0.002
Not Conserved
RP11-573G6.6
hsa-miR-145-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000566763
Biotype: lincRNA
Gene id: ENSG00000261671
Gene Name: RP11-573G6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
405-418
0.020
2
6mer
655-669
0.005
1
AC007950.2
hsa-miR-145-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000615045
Biotype: lincRNA
Gene id: ENSG00000276651
Gene Name: AC007950.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2214-2226
0.023
0
6mer
751-775
0.002
1
CTD-2162K18.4
hsa-miR-145-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590750
Biotype: lincRNA
Gene id: ENSG00000267260
Gene Name: CTD-2162K18.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-169
0.025
1
LINC00243
hsa-miR-145-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000399196
Biotype: lincRNA
Gene id: ENSG00000214894
Gene Name: LINC00243
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1007-1019
0.025
1
LINC00371
hsa-miR-145-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000563710
Biotype: lincRNA
Gene id: ENSG00000226792
Gene Name: LINC00371
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2407-2434
0.021
12
6mer
563-578
0.004
0
FAM99A
hsa-miR-145-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000538190
Biotype: lincRNA
Gene id: ENSG00000205866
Gene Name: FAM99A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1172-1196
0.010
2
7mer
444-463
0.004
0
6mer
1678-1705
0.003
0
6mer
1542-1556
0.002
1
6mer
310-326
0.002
0
6mer
324-343
0.001
0
6mer
392-411
0.001
1
6mer
341-360
0.001
Not Conserved
CTD-3010D24.3
hsa-miR-145-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584975
Biotype: lincRNA
Gene id: ENSG00000263893
Gene Name: CTD-3010D24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-67
0.025
1
AC016644.1
hsa-miR-145-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000438553
Biotype: antisense
Gene id: ENSG00000235635
Gene Name: AC016644.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-357
0.025
6
XLOC_002697
hsa-miR-145-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006086
Biotype: transcript isomorph
Gene id: XLOC_002697
Gene Name: XLOC_002697
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
620-646
0.025
2
CTD-2066L21.3
hsa-miR-145-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510327
Biotype: lincRNA
Gene id: ENSG00000250697
Gene Name: CTD-2066L21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-53
0.025
0
LINC01237
hsa-miR-145-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439601
Biotype: antisense
Gene id: ENSG00000233806
Gene Name: LINC01237
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
372-386
0.025
1
XLOC_008111
hsa-miR-145-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00016946
Biotype: transcript isomorph
Gene id: XLOC_008111
Gene Name: XLOC_008111
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
884-899
0.018
0
6mer
1521-1536
0.007
4
XLOC_008237
hsa-miR-145-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017372
Biotype: transcript isomorph
Gene id: XLOC_008237
Gene Name: XLOC_008237
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-149
0.025
1
DLX6-AS1
hsa-miR-145-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000452769
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3443-3470
0.016
1
7mer
2693-2701
0.005
2
6mer
3585-3601
0.004
6
AC010745.2
hsa-miR-145-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420404
Biotype: lincRNA
Gene id: ENSG00000228876
Gene Name: AC010745.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-72
0.025
0
RP11-141B14.1
hsa-miR-145-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000602760
Biotype: lincRNA
Gene id: ENSG00000270019
Gene Name: RP11-141B14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
866-874
0.025
2
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