LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
PWRN2
hsa-miR-145-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567246
Biotype: lincRNA
Gene id: ENSG00000260551
Gene Name: PWRN2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3482-3506
0.012
1
6mer
919-930
0.007
1
6mer
618-634
0.004
0
6mer
1463-1477
0.003
0
CTB-113D17.1
hsa-miR-145-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609389
Biotype: antisense
Gene id: ENSG00000272568
Gene Name: CTB-113D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
909-924
0.016
1
6mer
556-566
0.004
2
6mer
2918-2932
0.003
1
6mer
3514-3536
0.002
1
XLOC_006739
hsa-miR-145-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014649
Biotype: transcript isomorph
Gene id: XLOC_006739
Gene Name: XLOC_006739
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-121
0.025
1
CTBP1-AS2
hsa-miR-145-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000581398
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
340-354
0.014
1
7mer
3698-3721
0.007
1
7mer
1535-1548
0.004
0
RP11-386J22.3
hsa-miR-145-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000622201
Biotype: sense_intronic
Gene id: ENSG00000274421
Gene Name: RP11-386J22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
188-204
0.015
1
6mer
437-455
0.010
1
RP11-678G14.2
hsa-miR-145-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594564
Biotype: antisense
Gene id: ENSG00000268081
Gene Name: RP11-678G14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-52
0.025
0
RP11-269C4.2
hsa-miR-145-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553082
Biotype: antisense
Gene id: ENSG00000257904
Gene Name: RP11-269C4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
769-785
0.025
3
TMEM9B-AS1
hsa-miR-145-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525484
Biotype: antisense
Gene id: ENSG00000254860
Gene Name: TMEM9B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
574-591
0.013
1
7mer
550-576
0.007
0
6mer
692-708
0.005
2
XLOC_011957
hsa-miR-145-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024673
Biotype: transcript isomorph
Gene id: XLOC_011957
Gene Name: XLOC_011957
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
358-384
0.021
2
6mer
5-16
0.004
Not Conserved
RP11-94M14.2
hsa-miR-145-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000422206
Biotype: lincRNA
Gene id: ENSG00000224750
Gene Name: RP11-94M14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-367
0.025
0
RP1-78O14.1
hsa-miR-145-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550268
Biotype: lincRNA
Gene id: ENSG00000257894
Gene Name: RP1-78O14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
443-462
0.025
2
LINC00277
hsa-miR-145-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000440444
Biotype: lincRNA
Gene id: ENSG00000212766
Gene Name: LINC00277
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1361-1367
0.010
0
7mer
654-672
0.008
0
7mer
1125-1151
0.005
1
6mer
2155-2179
0.002
0
STAG3L5P-PVRIG2P-PILRB
hsa-miR-145-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_036570.1
Biotype: sense
Gene id: NR_036570.1 (gene)
Gene Name: STAG3L5P-PVRIG2P-PILRB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2156-2173
0.012
3
6mer
2414-2429
0.004
0
6mer
762-783
0.003
1
6mer
2016-2036
0.002
2
6mer
2709-2730
0.002
0
6mer
1038-1047
0.002
1
RP5-859D4.3
hsa-miR-145-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000445589
Biotype: lincRNA
Gene id: ENSG00000228482
Gene Name: RP5-859D4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
779-800
0.025
5
DAB1-AS1
hsa-miR-145-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000591173
Biotype: antisense
Gene id: ENSG00000226759
Gene Name: DAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
66-82
0.008
2
6mer
468-477
0.007
3
6mer
274-290
0.005
2
6mer
187-205
0.005
1
PCBP1-AS1
hsa-miR-145-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596573
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-318
0.025
0
RP11-65M17.3
hsa-miR-145-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528496
Biotype: lincRNA
Gene id: ENSG00000254968
Gene Name: RP11-65M17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
344-367
0.017
0
6mer
65-82
0.005
2
6mer
71-86
0.003
2
RP11-506B6.6
hsa-miR-145-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000590804
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-257
0.011
0
7mer
350-364
0.011
1
6mer
9-34
0.004
1
XLOC_013508
hsa-miR-145-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027834
Biotype: transcript isomorph
Gene id: XLOC_013508
Gene Name: XLOC_013508
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-548
0.013
0
6mer
871-896
0.007
3
6mer
238-257
0.005
2
CTD-2530H12.1
hsa-miR-145-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499390
Biotype: antisense
Gene id: ENSG00000247867
Gene Name: CTD-2530H12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
105-129
0.016
2
7mer
641-663
0.004
0
7mer
193-213
0.004
0
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