LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
CTD-2162K18.4
hsa-miR-145-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591531
Biotype: lincRNA
Gene id: ENSG00000267260
Gene Name: CTD-2162K18.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-332
0.025
1
LINC01499
hsa-miR-145-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528720
Biotype: lincRNA
Gene id: ENSG00000255171
Gene Name: LINC01499
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-204
0.025
1
RP11-793H13.3
hsa-miR-145-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548347
Biotype: antisense
Gene id: ENSG00000257550
Gene Name: RP11-793H13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1186-1211
0.025
0
RP11-493E12.2
hsa-miR-145-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609422
Biotype: sense_intronic
Gene id: ENSG00000273302
Gene Name: RP11-493E12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
576-595
0.025
3
RP11-620J15.2
hsa-miR-145-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499481
Biotype: lincRNA
Gene id: ENSG00000245651
Gene Name: RP11-620J15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3048-3066
0.015
1
7mer
413-423
0.007
1
6mer
2486-2510
0.002
0
6mer
1354-1377
0.002
2
CASC14
hsa-miR-145-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000566912
Biotype: lincRNA
Gene id: ENSG00000260455
Gene Name: CASC14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
749-760
0.020
2
6mer
829-837
0.006
6
XLOC_010574
hsa-miR-145-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021973
Biotype: transcript isomorph
Gene id: XLOC_010574
Gene Name: XLOC_010574
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
988-1013
0.013
0
7mer
516-540
0.007
0
6mer
927-945
0.005
0
XLOC_007154
hsa-miR-145-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015092
Biotype: transcript isomorph
Gene id: XLOC_007154
Gene Name: XLOC_007154
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
574-588
0.019
2
7mer
533-559
0.006
1
AP000662.4
hsa-miR-145-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526243
Biotype: sense_overlapping
Gene id: ENSG00000254602
Gene Name: AP000662.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
454-469
0.025
Not Conserved
XLOC_010101
hsa-miR-145-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020255
Biotype: transcript isomorph
Gene id: XLOC_010101
Gene Name: XLOC_010101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3047-3065
0.015
1
7mer
412-422
0.007
1
6mer
2485-2509
0.002
0
6mer
1353-1376
0.002
2
ST7-OT3
hsa-miR-145-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_002332.1
Biotype: sense
Gene id: NR_002332.1 (gene)
Gene Name: ST7-OT3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
963-975
0.022
15
6mer
50-66
0.003
Not Conserved
FAM13A-AS1
hsa-miR-145-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500765
Biotype: antisense
Gene id: ENSG00000248019
Gene Name: FAM13A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
246-268
0.017
Not Conserved
6mer
640-662
0.004
4
6mer
1747-1761
0.003
8
RP11-141J13.5
hsa-miR-145-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573270
Biotype: lincRNA
Gene id: ENSG00000261863
Gene Name: RP11-141J13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
896-919
0.020
0
6mer
548-558
0.003
1
6mer
347-370
0.002
1
XLOC_001224
hsa-miR-145-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001839
Biotype: transcript isomorph
Gene id: XLOC_001224
Gene Name: XLOC_001224
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-50
0.025
1
RP11-360A18.1
hsa-miR-145-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000454204
Biotype: lincRNA
Gene id: ENSG00000225960
Gene Name: RP11-360A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-211
0.025
3
LINC01346
hsa-miR-145-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000412674
Biotype: lincRNA
Gene id: ENSG00000233304
Gene Name: LINC01346
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-341
0.013
0
6mer
213-240
0.006
2
6mer
547-561
0.005
1
6mer
2450-2471
0.002
Not Conserved
GMDS-AS1
hsa-miR-145-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000534160
Biotype: lincRNA
Gene id: ENSG00000250903
Gene Name: GMDS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
80-98
0.025
0
MAGI2-AS3
hsa-miR-145-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000611793
Biotype: retained_intron
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
551-562
0.025
1
RP11-219J21.2
hsa-miR-145-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522524
Biotype: lincRNA
Gene id: ENSG00000253342
Gene Name: RP11-219J21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
412-435
0.025
0
XLOC_008935
hsa-miR-145-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018594
Biotype: transcript isomorph
Gene id: XLOC_008935
Gene Name: XLOC_008935
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
763-784
0.025
1
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