LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
RP11-389G6.4
hsa-miR-145-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000624061
Biotype: antisense
Gene id: ENSG00000279658
Gene Name: RP11-389G6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
391-401
0.026
1
AC004158.3
hsa-miR-145-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564508
Biotype: lincRNA
Gene id: ENSG00000260664
Gene Name: AC004158.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3778-3795
0.022
4
6mer
304-320
0.003
4
RP11-930O11.2
hsa-miR-145-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000560296
Biotype: lincRNA
Gene id: ENSG00000259483
Gene Name: RP11-930O11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
70-87
0.026
0
RP11-425I13.3
hsa-miR-145-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_033939.1
Biotype: antisense
Gene id: NR_033939.1 (gene)
Gene Name: RP11-425I13.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
183-208
0.026
0
SCOC-AS1
hsa-miR-145-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512692
Biotype: antisense
Gene id: ENSG00000196951
Gene Name: SCOC-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
185-210
0.026
0
RP11-436I24.1
hsa-miR-145-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000450575
Biotype: antisense
Gene id: ENSG00000235740
Gene Name: RP11-436I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
700-720
0.023
3
6mer
1010-1027
0.002
1
INMT-FAM188B
hsa-miR-145-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_037598.1
Biotype: sense
Gene id: NR_037598.1 (gene)
Gene Name: INMT-FAM188B
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2754-2779
0.015
7
7mer
312-335
0.005
3
6mer
3024-3037
0.003
1
6mer
2587-2605
0.003
7
TTTY9B
hsa-miR-145-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000545582
Biotype: antisense
Gene id: ENSG00000131007
Gene Name: TTTY9B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
101-108
0.026
1
AP000662.4
hsa-miR-145-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529908
Biotype: sense_overlapping
Gene id: ENSG00000254602
Gene Name: AP000662.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
515-530
0.026
Not Conserved
CTD-2378E12.1
hsa-miR-145-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000613161
Biotype: lincRNA
Gene id: ENSG00000273674
Gene Name: CTD-2378E12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2040-2063
0.013
0
7mer
1972-1989
0.007
0
6mer
2305-2325
0.004
0
6mer
1049-1065
0.002
1
RP11-420K14.8
hsa-miR-145-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593824
Biotype: lincRNA
Gene id: ENSG00000268184
Gene Name: RP11-420K14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
414-437
0.026
0
RP11-203J24.8
hsa-miR-145-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000592240
Biotype: antisense
Gene id: ENSG00000227218
Gene Name: RP11-203J24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
114-136
0.016
2
6mer
27-43
0.006
2
6mer
27-47
0.004
1
AC012456.4
hsa-miR-145-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431500
Biotype: antisense
Gene id: ENSG00000230790
Gene Name: AC012456.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-41
0.025
1
AC140912.1
hsa-miR-145-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000577171
Biotype: lincRNA
Gene id: ENSG00000261227
Gene Name: AC140912.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
998-1009
0.016
7
7mer
484-499
0.010
2
XLOC_009323
hsa-miR-145-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019114
Biotype: transcript isomorph
Gene id: XLOC_009323
Gene Name: XLOC_009323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
480-498
0.021
Not Conserved
6mer
3180-3202
0.003
Not Conserved
6mer
2305-2317
0.001
1
XLOC_002996
hsa-miR-145-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006377
Biotype: transcript isomorph
Gene id: XLOC_002996
Gene Name: XLOC_002996
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3726-3739
0.005
Not Conserved
8mer
3156-3175
0.004
Not Conserved
6mer
6402-6415
0.004
Not Conserved
8mer
3538-3551
0.003
Not Conserved
8mer
3302-3315
0.002
Not Conserved
8mer
3350-3363
0.002
Not Conserved
8mer
3585-3598
0.002
Not Conserved
8mer
3386-3410
0.002
Not Conserved
8mer
3198-3222
0.001
Not Conserved
6mer
3873-3888
0.001
Not Conserved
RP11-1069G10.1
hsa-miR-145-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558888
Biotype: antisense
Gene id: ENSG00000259370
Gene Name: RP11-1069G10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
906-916
0.007
0
7mer
6887-6912
0.007
0
7mer
2262-2279
0.004
1
7mer
3949-3959
0.004
1
7mer
4945-4971
0.002
Not Conserved
6mer
1265-1282
0.001
2
6mer
4984-5008
0.001
1
XLOC_011319
hsa-miR-145-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023472
Biotype: transcript isomorph
Gene id: XLOC_011319
Gene Name: XLOC_011319
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
701-718
0.018
Not Conserved
6mer
803-827
0.007
1
XLOC_012454
hsa-miR-145-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025108
Biotype: transcript isomorph
Gene id: XLOC_012454
Gene Name: XLOC_012454
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2188-2210
0.012
3
7mer
289-307
0.010
1
6mer
587-609
0.003
1
AC009158.1
hsa-miR-145-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000432973
Biotype: lincRNA
Gene id: ENSG00000231876
Gene Name: AC009158.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
215-226
0.025
1
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