LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
RP11-114M1.1
hsa-miR-145-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423466
Biotype: lincRNA
Gene id: ENSG00000228561
Gene Name: RP11-114M1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-46
0.026
2
RP11-350G8.9
hsa-miR-145-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607963
Biotype: antisense
Gene id: ENSG00000273110
Gene Name: RP11-350G8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
521-546
0.026
2
RP11-1141N12.1
hsa-miR-145-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555490
Biotype: lincRNA
Gene id: ENSG00000258496
Gene Name: RP11-1141N12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-90
0.026
8
SHANK3
hsa-miR-145-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000445220
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
393-419
0.007
11
6mer
588-611
0.007
9
6mer
69-80
0.003
3
6mer
4528-4550
0.003
7
6mer
1145-1170
0.002
3
6mer
3272-3287
0.002
6
6mer
3563-3578
0.002
5
TPTEP1
hsa-miR-145-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000415121
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
247-260
0.026
1
XLOC_006112
hsa-miR-145-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013455
Biotype: transcript isomorph
Gene id: XLOC_006112
Gene Name: XLOC_006112
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
646-655
0.014
0
6mer
200-225
0.009
1
6mer
832-844
0.004
0
LINC01304
hsa-miR-145-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000592948
Biotype: lincRNA
Gene id: ENSG00000237401
Gene Name: LINC01304
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
224-234
0.021
1
6mer
204-226
0.005
1
ARL2-SNX15
hsa-miR-145-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037650.1
Biotype: sense
Gene id: NR_037650.1 (gene)
Gene Name: ARL2-SNX15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1780-1805
0.016
5
6mer
159-169
0.008
6
6mer
1367-1388
0.002
5
SVIL-AS1
hsa-miR-145-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000430295
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-377
0.026
2
ARRDC1-AS1
hsa-miR-145-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000496793
Biotype: antisense
Gene id: ENSG00000203993
Gene Name: ARRDC1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
263-278
0.020
2
7mer
504-520
0.003
0
6mer
1387-1402
0.003
0
CTD-2201I18.1
hsa-miR-145-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514042
Biotype: antisense
Gene id: ENSG00000249825
Gene Name: CTD-2201I18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1878-1899
0.016
0
6mer
111-133
0.006
1
6mer
1824-1828
0.003
3
6mer
1379-1392
0.001
0
RP11-58G13.1
hsa-miR-145-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586106
Biotype: antisense
Gene id: ENSG00000267039
Gene Name: RP11-58G13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
435-460
0.026
0
RP11-168O16.1
hsa-miR-145-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000458003
Biotype: antisense
Gene id: ENSG00000229191
Gene Name: RP11-168O16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2819-2840
0.013
0
6mer
356-371
0.007
2
7mer
1016-1039
0.005
0
6mer
1444-1468
0.001
1
CTB-96E2.7
hsa-miR-145-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577850
Biotype: antisense
Gene id: ENSG00000265618
Gene Name: CTB-96E2.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-142
0.020
1
6mer
735-751
0.006
1
LINC01468
hsa-miR-145-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000422763
Biotype: lincRNA
Gene id: ENSG00000231131
Gene Name: LINC01468
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-285
0.026
1
RP11-871F6.3
hsa-miR-145-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540399
Biotype: lincRNA
Gene id: ENSG00000256994
Gene Name: RP11-871F6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-52
0.022
2
6mer
805-832
0.004
1
XLOC_001787
hsa-miR-145-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003973
Biotype: transcript isomorph
Gene id: XLOC_001787
Gene Name: XLOC_001787
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
297-321
0.026
1
LINC00343
hsa-miR-145-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000598478
Biotype: lincRNA
Gene id: ENSG00000226620
Gene Name: LINC00343
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
340-357
0.026
2
IQCH-AS1
hsa-miR-145-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561232
Biotype: lincRNA
Gene id: ENSG00000259673
Gene Name: IQCH-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3693-3700
0.007
8
7mer
3805-3816
0.006
6
7mer
5144-5166
0.004
3
7mer
5258-5279
0.004
1
6mer
1589-1601
0.003
0
7mer
3494-3511
0.003
1
LOC100506730
hsa-miR-145-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037847.1
Biotype: lincRNA
Gene id: NR_037847.1 (gene)
Gene Name: LOC100506730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1874-1889
0.021
1
6mer
2087-2097
0.005
0
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