LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
LINC01499
hsa-miR-145-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529282
Biotype: lincRNA
Gene id: ENSG00000255171
Gene Name: LINC01499
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
429-453
0.026
1
CTD-2553C6.1
hsa-miR-145-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592332
Biotype: antisense
Gene id: ENSG00000267650
Gene Name: CTD-2553C6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
500-518
0.019
5
7mer
217-243
0.007
6
LINC01468
hsa-miR-145-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000435813
Biotype: lincRNA
Gene id: ENSG00000231131
Gene Name: LINC01468
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
701-725
0.026
1
XLOC_010989
hsa-miR-145-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022700
Biotype: transcript isomorph
Gene id: XLOC_010989
Gene Name: XLOC_010989
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
316-326
0.016
1
7mer
629-649
0.010
2
THAP9-AS1
hsa-miR-145-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512932
Biotype: antisense
Gene id: ENSG00000251022
Gene Name: THAP9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
765-785
0.019
2
6mer
214-239
0.008
1
XLOC_000235
hsa-miR-145-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000970
Biotype: transcript isomorph
Gene id: XLOC_000235
Gene Name: XLOC_000235
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-290
0.026
0
XLOC_006415
hsa-miR-145-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013782
Biotype: transcript isomorph
Gene id: XLOC_006415
Gene Name: XLOC_006415
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
251-267
0.026
2
BHLHE40-AS1
hsa-miR-145-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000615178
Biotype: antisense
Gene id: ENSG00000235831
Gene Name: BHLHE40-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
417-438
0.026
2
XLOC_013060
hsa-miR-145-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026788
Biotype: transcript isomorph
Gene id: XLOC_013060
Gene Name: XLOC_013060
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-167
0.026
1
XLOC_005501
hsa-miR-145-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012617
Biotype: transcript isomorph
Gene id: XLOC_005501
Gene Name: XLOC_005501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
300-317
0.014
1
6mer
754-781
0.009
1
6mer
905-921
0.003
0
WEE2-AS1
hsa-miR-145-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000473776
Biotype: retained_intron
Gene id: ENSG00000228775
Gene Name: WEE2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-24
0.026
2
LINC01111
hsa-miR-145-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518732
Biotype: lincRNA
Gene id: ENSG00000254300
Gene Name: LINC01111
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
752-775
0.026
Not Conserved
CBR3-AS1
hsa-miR-145-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000453159
Biotype: antisense
Gene id: ENSG00000236830
Gene Name: CBR3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-89
0.021
0
6mer
351-364
0.005
1
LINC01187
hsa-miR-145-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506431
Biotype: lincRNA
Gene id: ENSG00000249601
Gene Name: LINC01187
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1973-1987
0.024
2
6mer
1628-1644
0.002
1
RP11-140I24.1
hsa-miR-145-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000554640
Biotype: lincRNA
Gene id: ENSG00000258779
Gene Name: RP11-140I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1733-1758
0.026
1
TEX36-AS1
hsa-miR-145-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000446081
Biotype: antisense
Gene id: ENSG00000237675
Gene Name: TEX36-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
705-723
0.021
2
6mer
347-363
0.005
1
MIR7515HG
hsa-miR-145-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585718
Biotype: lincRNA
Gene id: ENSG00000236172
Gene Name: MIR7515HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
275-294
0.017
1
7mer
284-309
0.009
0
MIR4519
hsa-miR-145-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565573
Biotype: antisense
Gene id: ENSG00000260083
Gene Name: MIR4519
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
736-746
0.022
1
7mer
519-542
0.004
0
AC007392.3
hsa-miR-145-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000433396
Biotype: lincRNA
Gene id: ENSG00000232046
Gene Name: AC007392.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
455-476
0.019
4
6mer
224-240
0.004
1
6mer
298-318
0.004
Not Conserved
AC010976.2
hsa-miR-145-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000619302
Biotype: antisense
Gene id: ENSG00000231731
Gene Name: AC010976.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-369
0.020
0
6mer
224-234
0.006
1
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