LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
PCBP1-AS1
hsa-miR-145-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437456
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-187
0.027
0
XLOC_008041
hsa-miR-145-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017226
Biotype: transcript isomorph
Gene id: XLOC_008041
Gene Name: XLOC_008041
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-214
0.027
1
LINC00707
hsa-miR-145-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436383
Biotype: lincRNA
Gene id: ENSG00000238266
Gene Name: LINC00707
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
752-772
0.011
0
7mer
513-536
0.007
Not Conserved
6mer
575-580
0.003
0
6mer
528-540
0.002
Not Conserved
6mer
1181-1197
0.002
Not Conserved
6mer
1239-1252
0.001
1
AC008079.10
hsa-miR-145-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16243-16270
0.013
9
7mer
17320-17345
0.005
1
6mer
5662-5670
0.002
3
8mer+mismatch
920-945
0.002
0
6mer
4685-4695
0.001
0
6mer
8387-8406
0.001
2
7mer
7398-7423
0.001
Not Conserved
7mer
18903-18924
0.001
Not Conserved
6mer
9542-9559
0.001
0
AADACL2-AS1
hsa-miR-145-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000475855
Biotype: antisense
Gene id: ENSG00000242908
Gene Name: AADACL2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
100-119
0.027
0
CHKB-CPT1B
hsa-miR-145-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_027928.2
Biotype: sense
Gene id: NR_027928.2 (gene)
Gene Name: CHKB-CPT1B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3056-3075
0.012
3
9mer
1841-1852
0.008
5
6mer
433-451
0.005
4
6mer
1601-1627
0.002
5
USP2-AS1
hsa-miR-145-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000498979
Biotype: antisense
Gene id: ENSG00000245248
Gene Name: USP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
55-72
0.010
5
7mer
325-344
0.007
1
6mer
910-925
0.003
1
6mer
1684-1708
0.002
2
6mer
572-590
0.002
1
6mer
708-718
0.002
1
AC009403.2
hsa-miR-145-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000460022
Biotype: antisense
Gene id: ENSG00000216895
Gene Name: AC009403.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
787-804
0.014
0
6mer
574-595
0.008
2
6mer
951-965
0.005
1
STAG3L5P-PVRIG2P-PILRB
hsa-miR-145-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_036569.1
Biotype: sense
Gene id: NR_036569.1 (gene)
Gene Name: STAG3L5P-PVRIG2P-PILRB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2832-2849
0.014
3
6mer
3090-3105
0.004
0
6mer
694-715
0.003
1
6mer
3385-3406
0.002
0
6mer
2483-2503
0.002
2
6mer
1069-1078
0.001
1
AC006116.15
hsa-miR-145-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593258
Biotype: sense_intronic
Gene id: ENSG00000267429
Gene Name: AC006116.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1017-1038
0.013
0
6mer
934-956
0.013
0
XLOC_013753
hsa-miR-145-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027891
Biotype: transcript isomorph
Gene id: XLOC_013753
Gene Name: XLOC_013753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1753-1775
0.023
3
6mer
359-377
0.004
1
CTD-3154N5.2
hsa-miR-145-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000617850
Biotype: lincRNA
Gene id: ENSG00000275527
Gene Name: CTD-3154N5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
216-238
0.019
0
6mer
355-378
0.005
2
7mer
384-409
0.003
1
RP13-614K11.1
hsa-miR-145-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_040065.1
Biotype: lincRNA
Gene id: NR_040065.1 (gene)
Gene Name: RP13-614K11.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-346
0.015
0
6mer
552-566
0.006
1
6mer
218-245
0.006
2
STK4-AS1
hsa-miR-145-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000434401
Biotype: lincRNA
Gene id: ENSG00000227477
Gene Name: STK4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1759-1781
0.023
3
6mer
365-383
0.004
1
USP3-AS1
hsa-miR-145-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560067
Biotype: antisense
Gene id: ENSG00000259248
Gene Name: USP3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-90
0.026
1
USP3-AS1
hsa-miR-145-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560962
Biotype: antisense
Gene id: ENSG00000259248
Gene Name: USP3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-239
0.026
1
AP001065.15
hsa-miR-145-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000449713
Biotype: lincRNA
Gene id: ENSG00000228709
Gene Name: AP001065.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
24-49
0.017
1
7mer
666-686
0.010
0
CTC-558O2.1
hsa-miR-145-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522615
Biotype: antisense
Gene id: ENSG00000254042
Gene Name: CTC-558O2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3234-3252
0.017
3
6mer
19-38
0.004
3
6mer
2331-2356
0.002
1
6mer
1165-1182
0.002
0
6mer
2427-2437
0.001
0
LL21NC02-1C16.1
hsa-miR-145-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000609461
Biotype: sense_intronic
Gene id: ENSG00000273027
Gene Name: LL21NC02-1C16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-297
0.026
1
RP11-347H15.4
hsa-miR-145-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525654
Biotype: lincRNA
Gene id: ENSG00000254518
Gene Name: RP11-347H15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-162
0.026
Not Conserved
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