LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
LRRC75A-AS1
hsa-miR-145-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000497774
Biotype: retained_intron
Gene id: ENSG00000175061
Gene Name: LRRC75A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
563-587
0.019
1
6mer
195-214
0.006
1
6mer
718-739
0.002
1
AC105339.1
hsa-miR-145-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000440479
Biotype: lincRNA
Gene id: ENSG00000228141
Gene Name: AC105339.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2265-2278
0.017
6
6mer
2359-2379
0.004
1
6mer
714-735
0.003
0
6mer
612-633
0.002
1
RP4-539M6.14
hsa-miR-145-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000610156
Biotype: antisense
Gene id: ENSG00000181123
Gene Name: RP4-539M6.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
821-839
0.022
1
6mer
739-747
0.004
2
AC107081.5
hsa-miR-145-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000425779
Biotype: antisense
Gene id: ENSG00000236498
Gene Name: AC107081.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-143
0.027
7
AP000476.1
hsa-miR-145-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000415182
Biotype: lincRNA
Gene id: ENSG00000237484
Gene Name: AP000476.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
707-719
0.008
1
6mer
1831-1854
0.005
0
7mer
238-261
0.005
1
7mer
411-432
0.005
0
6mer
371-387
0.004
1
USP2-AS1
hsa-miR-145-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_034160.1
Biotype: antisense
Gene id: NR_034160.1 (gene)
Gene Name: USP2-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
87-104
0.010
5
7mer
357-376
0.007
1
6mer
942-957
0.006
1
6mer
740-750
0.002
1
6mer
604-622
0.002
1
RP11-521D12.1
hsa-miR-145-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000478468
Biotype: lincRNA
Gene id: ENSG00000240687
Gene Name: RP11-521D12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
589-601
0.027
2
XLOC_000835
hsa-miR-145-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001496
Biotype: transcript isomorph
Gene id: XLOC_000835
Gene Name: XLOC_000835
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
833-856
0.027
1
RP1-12G14.5
hsa-miR-145-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000446392
Biotype: lincRNA
Gene id: ENSG00000235168
Gene Name: RP1-12G14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
173-185
0.022
0
6mer
108-132
0.005
1
RP11-768B22.2
hsa-miR-145-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515789
Biotype: antisense
Gene id: ENSG00000248571
Gene Name: RP11-768B22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
865-881
0.017
1
7mer
2199-2213
0.010
0
RP1-117O3.2
hsa-miR-145-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427524
Biotype: antisense
Gene id: ENSG00000236065
Gene Name: RP1-117O3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1560-1579
0.021
3
6mer
1513-1532
0.006
2
AC093590.1
hsa-miR-145-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427045
Biotype: lincRNA
Gene id: ENSG00000238217
Gene Name: AC093590.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-56
0.020
1
6mer
92-111
0.006
4
CTC-347C20.1
hsa-miR-145-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513767
Biotype: lincRNA
Gene id: ENSG00000251613
Gene Name: CTC-347C20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
281-302
0.024
3
6mer
498-523
0.002
0
RP11-221N13.3
hsa-miR-145-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539116
Biotype: lincRNA
Gene id: ENSG00000256268
Gene Name: RP11-221N13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
423-439
0.016
1
6mer
48-65
0.011
5
CTD-2643K12.3
hsa-miR-145-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558874
Biotype: lincRNA
Gene id: ENSG00000259724
Gene Name: CTD-2643K12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2389-2408
0.019
1
6mer
2439-2443
0.003
0
6mer
2886-2900
0.002
1
6mer
1196-1219
0.002
0
FLJ22763
hsa-miR-145-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000477643
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
308-323
0.027
Not Conserved
RP11-80I3.1
hsa-miR-145-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000612217
Biotype: lincRNA
Gene id: ENSG00000276759
Gene Name: RP11-80I3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
411-426
0.022
0
7mer
1038-1059
0.004
1
CTD-2516F10.2
hsa-miR-145-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000622955
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2644-2665
0.013
0
7mer
1831-1849
0.005
1
6mer
587-602
0.003
3
6mer
1419-1434
0.002
1
6mer
1753-1777
0.002
1
6mer
1376-1392
0.001
1
RP11-535A19.1
hsa-miR-145-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534354
Biotype: antisense
Gene id: ENSG00000254814
Gene Name: RP11-535A19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-171
0.027
1
RNF219-AS1
hsa-miR-145-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000560209
Biotype: antisense
Gene id: ENSG00000234377
Gene Name: RNF219-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
459-485
0.015
1
7mer
477-495
0.012
2
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