LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
AP000662.4
hsa-miR-145-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525988
Biotype: sense_overlapping
Gene id: ENSG00000254602
Gene Name: AP000662.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
548-563
0.027
Not Conserved
RP11-426L16.9
hsa-miR-145-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566195
Biotype: antisense
Gene id: ENSG00000261595
Gene Name: RP11-426L16.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1378-1392
0.020
2
7mer
1919-1932
0.005
1
6mer
833-837
0.003
0
XLOC_004457
hsa-miR-145-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010010
Biotype: transcript isomorph
Gene id: XLOC_004457
Gene Name: XLOC_004457
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2780-2791
0.018
0
7mer
2342-2357
0.007
0
7mer
1332-1359
0.003
0
SMAD1-AS2
hsa-miR-145-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508936
Biotype: antisense
Gene id: ENSG00000250582
Gene Name: SMAD1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
862-877
0.021
1
6mer
858-866
0.006
3
NPHP3-AS1
hsa-miR-145-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_002811.1
Biotype: antisense
Gene id: NR_002811.1 (gene)
Gene Name: NPHP3-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-344
0.009
0
7mer
1199-1216
0.008
1
7mer
92-116
0.006
0
6mer
413-431
0.003
1
6mer
848-869
0.002
1
XLOC_005748
hsa-miR-145-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012190
Biotype: transcript isomorph
Gene id: XLOC_005748
Gene Name: XLOC_005748
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1993-2003
0.017
2
7mer
487-509
0.008
1
6mer
1623-1632
0.002
1
LINC01342
hsa-miR-145-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416774
Biotype: lincRNA
Gene id: ENSG00000223823
Gene Name: LINC01342
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1263-1288
0.023
1
6mer
1477-1497
0.004
1
XLOC_009274
hsa-miR-145-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019461
Biotype: transcript isomorph
Gene id: XLOC_009274
Gene Name: XLOC_009274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
320-327
0.021
2
7mer
169-195
0.006
1
XLOC_003316
hsa-miR-145-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005474
Biotype: transcript isomorph
Gene id: XLOC_003316
Gene Name: XLOC_003316
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
749-767
0.014
1
7mer
1386-1408
0.011
0
6mer
722-738
0.002
1
LINC00426
hsa-miR-145-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000447147
Biotype: lincRNA
Gene id: ENSG00000238121
Gene Name: LINC00426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1024-1036
0.020
3
6mer
3-11
0.007
1
LINC00371
hsa-miR-145-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_102432.1
Biotype: lincRNA
Gene id: NR_102432.1 (gene)
Gene Name: LINC00371
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
511-538
0.027
12
CTB-92J24.2
hsa-miR-145-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594230
Biotype: sense_intronic
Gene id: ENSG00000269397
Gene Name: CTB-92J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
71-87
0.027
0
KANTR
hsa-miR-145-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000605526
Biotype: lincRNA
Gene id: ENSG00000232593
Gene Name: KANTR
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-439
0.027
3
XLOC_009112
hsa-miR-145-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019279
Biotype: transcript isomorph
Gene id: XLOC_009112
Gene Name: XLOC_009112
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-97
0.027
1
RP11-1C1.4
hsa-miR-145-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515243
Biotype: lincRNA
Gene id: ENSG00000249396
Gene Name: RP11-1C1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
552-571
0.022
1
6mer
1967-1981
0.004
1
6mer
1062-1085
0.001
Not Conserved
FLJ22763
hsa-miR-145-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000479039
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
393-408
0.027
Not Conserved
XLOC_001266
hsa-miR-145-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001887
Biotype: transcript isomorph
Gene id: XLOC_001266
Gene Name: XLOC_001266
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-82
0.027
1
XLOC_002813
hsa-miR-145-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006222
Biotype: transcript isomorph
Gene id: XLOC_002813
Gene Name: XLOC_002813
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
786-808
0.021
0
6mer
294-310
0.006
1
RP11-79E3.3
hsa-miR-145-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505018
Biotype: lincRNA
Gene id: ENSG00000250954
Gene Name: RP11-79E3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2308-2333
0.016
1
7mer
1668-1683
0.008
0
6mer
881-904
0.003
0
RP3-333B15.5
hsa-miR-145-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000611020
Biotype: lincRNA
Gene id: ENSG00000273838
Gene Name: RP3-333B15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
138-154
0.012
1
6mer
37-59
0.009
0
6mer
326-353
0.007
0
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