LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
FLJ22763
hsa-miR-145-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467240
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1885-1900
0.028
Not Conserved
RP11-594N15.2
hsa-miR-145-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519242
Biotype: lincRNA
Gene id: ENSG00000254266
Gene Name: RP11-594N15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-465
0.014
1
7mer
595-620
0.008
0
6mer
886-900
0.006
1
XLOC_005620
hsa-miR-145-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012089
Biotype: transcript isomorph
Gene id: XLOC_005620
Gene Name: XLOC_005620
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
465-486
0.015
1
8mer+wobble
483-502
0.013
0
RP11-749H17.2
hsa-miR-145-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000587369
Biotype: sense_intronic
Gene id: ENSG00000267354
Gene Name: RP11-749H17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
536-550
0.028
2
RP11-347H15.4
hsa-miR-145-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529219
Biotype: lincRNA
Gene id: ENSG00000254518
Gene Name: RP11-347H15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-123
0.028
Not Conserved
RP11-159H22.2
hsa-miR-145-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525833
Biotype: antisense
Gene id: ENSG00000254862
Gene Name: RP11-159H22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
681-702
0.013
2
8mer+wobble
266-292
0.010
5
6mer
1071-1093
0.005
0
AC137932.6
hsa-miR-145-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562995
Biotype: antisense
Gene id: ENSG00000261253
Gene Name: AC137932.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
551-567
0.013
1
6mer
1179-1188
0.009
1
7mer
700-722
0.005
0
NR2F2-AS1
hsa-miR-145-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557863
Biotype: antisense
Gene id: ENSG00000247809
Gene Name: NR2F2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
266-286
0.016
7
6mer
166-182
0.006
3
6mer
463-488
0.005
3
XLOC_003771
hsa-miR-145-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008316
Biotype: transcript isomorph
Gene id: XLOC_003771
Gene Name: XLOC_003771
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
729-750
0.028
1
AF064858.6
hsa-miR-145-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000380931
Biotype: lincRNA
Gene id: ENSG00000205622
Gene Name: AF064858.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1107-1126
0.020
1
6mer
172-184
0.003
0
6mer
3003-3019
0.002
1
6mer
2817-2837
0.002
Not Conserved
XLOC_006258
hsa-miR-145-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014217
Biotype: transcript isomorph
Gene id: XLOC_006258
Gene Name: XLOC_006258
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-430
0.021
3
6mer
30-56
0.006
1
RP11-141M1.3
hsa-miR-145-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000454681
Biotype: lincRNA
Gene id: ENSG00000230490
Gene Name: RP11-141M1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
686-700
0.027
6
PRKCQ-AS1
hsa-miR-145-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609346
Biotype: lincRNA
Gene id: ENSG00000237943
Gene Name: PRKCQ-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
797-804
0.027
Not Conserved
MAMDC2-AS1
hsa-miR-145-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377178
Biotype: antisense
Gene id: ENSG00000204706
Gene Name: MAMDC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
884-898
0.024
1
6mer
1128-1153
0.003
1
XLOC_005077
hsa-miR-145-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010550
Biotype: transcript isomorph
Gene id: XLOC_005077
Gene Name: XLOC_005077
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6402-6416
0.024
2
6mer
6057-6073
0.002
1
6mer
4474-4495
0.001
0
NPHP3-AS1
hsa-miR-145-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000504440
Biotype: antisense
Gene id: ENSG00000248724
Gene Name: NPHP3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-344
0.009
0
7mer
1199-1216
0.008
1
7mer
92-116
0.006
0
6mer
413-431
0.003
1
6mer
848-869
0.002
1
HAS2-AS1
hsa-miR-145-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514180
Biotype: antisense
Gene id: ENSG00000248690
Gene Name: HAS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1188-1200
0.027
1
RP5-1099E6.3
hsa-miR-145-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420867
Biotype: antisense
Gene id: ENSG00000236292
Gene Name: RP5-1099E6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
318-328
0.027
2
LINC00960
hsa-miR-145-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463183
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1102-1121
0.015
1
6mer
498-518
0.012
1
RP11-214L13.1
hsa-miR-145-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000563553
Biotype: lincRNA
Gene id: ENSG00000260930
Gene Name: RP11-214L13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
623-647
0.027
1
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