LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
RP11-357P18.2
hsa-miR-145-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000618707
Biotype: lincRNA
Gene id: ENSG00000274245
Gene Name: RP11-357P18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-223
0.028
0
RP11-834C11.4
hsa-miR-145-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000508564
Biotype: lincRNA
Gene id: ENSG00000250742
Gene Name: RP11-834C11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
122-148
0.028
3
RP11-501O2.5
hsa-miR-145-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000469812
Biotype: lincRNA
Gene id: ENSG00000242440
Gene Name: RP11-501O2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
301-314
0.015
1
7mer
260-279
0.013
3
RP1-178F10.3
hsa-miR-145-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000623730
Biotype: TEC
Gene id: ENSG00000267350
Gene Name: RP1-178F10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1461-1485
0.028
3
CBR3-AS1
hsa-miR-145-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000413862
Biotype: antisense
Gene id: ENSG00000236830
Gene Name: CBR3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-70
0.023
0
6mer
332-345
0.005
1
XLOC_006493
hsa-miR-145-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013861
Biotype: transcript isomorph
Gene id: XLOC_006493
Gene Name: XLOC_006493
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
389-414
0.027
1
6mer
1766-1792
0.002
1
RP11-37B2.1
hsa-miR-145-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000621883
Biotype: lincRNA
Gene id: ENSG00000251136
Gene Name: RP11-37B2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3329-3356
0.015
1
6mer
306-331
0.006
2
6mer
3411-3433
0.005
2
6mer
1118-1123
0.003
1
RP11-263K19.6
hsa-miR-145-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455788
Biotype: antisense
Gene id: ENSG00000236263
Gene Name: RP11-263K19.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-221
0.028
2
XLOC_006790
hsa-miR-145-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014691
Biotype: transcript isomorph
Gene id: XLOC_006790
Gene Name: XLOC_006790
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-148
0.028
1
LRP4-AS1
hsa-miR-145-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000502049
Biotype: antisense
Gene id: ENSG00000247675
Gene Name: LRP4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
905-930
0.016
Not Conserved
8mer
769-783
0.010
2
6mer
551-568
0.002
0
CTA-125H2.2
hsa-miR-145-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000600211
Biotype: antisense
Gene id: ENSG00000231933
Gene Name: CTA-125H2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
314-332
0.018
0
6mer
838-856
0.004
1
6mer
864-891
0.004
2
6mer
790-802
0.002
0
XLOC_013931
hsa-miR-145-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028843
Biotype: transcript isomorph
Gene id: XLOC_013931
Gene Name: XLOC_013931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1433-1460
0.013
0
6mer
824-840
0.013
0
6mer
214-239
0.003
Not Conserved
RP11-93I21.3
hsa-miR-145-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000563724
Biotype: lincRNA
Gene id: ENSG00000261083
Gene Name: RP11-93I21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1095-1110
0.021
1
6mer
399-416
0.004
0
6mer
1202-1215
0.004
1
AC104820.2
hsa-miR-145-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428474
Biotype: lincRNA
Gene id: ENSG00000234663
Gene Name: AC104820.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
391-403
0.017
1
7mer
187-210
0.006
1
6mer
233-248
0.005
1
MIR10A
hsa-miR-145-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000548801
Biotype: sense_intronic
Gene id: ENSG00000257178
Gene Name: MIR10A
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
338-355
0.023
7
6mer
1578-1593
0.002
4
6mer
2487-2507
0.001
0
6mer
1915-1935
0.001
3
RP11-248N22.1
hsa-miR-145-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511346
Biotype: lincRNA
Gene id: ENSG00000250957
Gene Name: RP11-248N22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
889-910
0.028
1
XLOC_007035
hsa-miR-145-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
118-137
0.014
0
8mer
4853-4865
0.005
0
6mer
4568-4589
0.002
1
6mer
7880-7907
0.002
0
6mer
12002-12023
0.002
1
7mer
6254-6280
0.001
0
6mer
14531-14547
0.001
Not Conserved
6mer
6269-6286
0.001
Not Conserved
6mer
4792-4804
0.000
Not Conserved
AC009518.4
hsa-miR-145-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415393
Biotype: lincRNA
Gene id: ENSG00000224865
Gene Name: AC009518.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1219-1224
0.024
1
6mer
678-702
0.004
4
NAV2-IT1
hsa-miR-145-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528204
Biotype: sense_intronic
Gene id: ENSG00000255270
Gene Name: NAV2-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-227
0.028
1
RP5-968P14.2
hsa-miR-145-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569378
Biotype: antisense
Gene id: ENSG00000260063
Gene Name: RP5-968P14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
163-186
0.013
6
7mer
459-473
0.011
6
6mer
981-988
0.005
7
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