LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
LINC01257
hsa-miR-145-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000376678
Biotype: lincRNA
Gene id: ENSG00000204603
Gene Name: LINC01257
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2362-2378
0.028
0
6mer
1746-1764
0.002
1
RP11-731F5.1
hsa-miR-145-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000479229
Biotype: lincRNA
Gene id: ENSG00000254140
Gene Name: RP11-731F5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
367-393
0.014
Not Conserved
9mer
255-282
0.007
Not Conserved
6mer
324-350
0.004
0
6mer
173-190
0.003
Not Conserved
6mer
235-257
0.003
Not Conserved
RP11-485G4.2
hsa-miR-145-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608374
Biotype: lincRNA
Gene id: ENSG00000272565
Gene Name: RP11-485G4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-167
0.026
3
6mer
4195-4207
0.004
1
HCG16
hsa-miR-145-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000445544
Biotype: antisense
Gene id: ENSG00000244349
Gene Name: HCG16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-82
0.030
1
LL22NC03-22D1.1
hsa-miR-145-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11472-11495
0.006
Not Conserved
7mer
3058-3075
0.005
1
7mer
13057-13072
0.004
1
6mer
25090-25106
0.003
2
6mer
17979-17992
0.002
3
7mer
27704-27728
0.002
0
6mer
8129-8152
0.002
0
6mer
9352-9376
0.001
1
6mer
2440-2455
0.001
1
6mer
10738-10752
0.001
0
6mer
11634-11650
0.001
Not Conserved
6mer
13112-13132
0.001
0
LINC00506
hsa-miR-145-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_047469.1
Biotype: lincRNA
Gene id: NR_047469.1 (gene)
Gene Name: LINC00506
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3997-4013
0.026
1
6mer
466-477
0.004
0
RP11-61D3.1
hsa-miR-145-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000420146
Biotype: lincRNA
Gene id: ENSG00000226680
Gene Name: RP11-61D3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-231
0.030
0
CTD-2291D10.3
hsa-miR-145-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599269
Biotype: lincRNA
Gene id: ENSG00000269543
Gene Name: CTD-2291D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-121
0.030
0
LINC01187
hsa-miR-145-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000520275
Biotype: lincRNA
Gene id: ENSG00000249601
Gene Name: LINC01187
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-208
0.030
2
RP5-994D16.9
hsa-miR-145-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447572
Biotype: antisense
Gene id: ENSG00000228452
Gene Name: RP5-994D16.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-49
0.030
1
RP11-717H13.1
hsa-miR-145-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512241
Biotype: lincRNA
Gene id: ENSG00000248339
Gene Name: RP11-717H13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4539-4544
0.008
0
8mer
3462-3479
0.007
0
6mer
82-95
0.006
0
6mer
600-619
0.004
1
7mer
2323-2328
0.004
0
LINC01487
hsa-miR-145-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000490497
Biotype: lincRNA
Gene id: ENSG00000241336
Gene Name: LINC01487
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
250-274
0.030
1
XLOC_004419
hsa-miR-145-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010710
Biotype: transcript isomorph
Gene id: XLOC_004419
Gene Name: XLOC_004419
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
905-918
0.014
0
6mer
1641-1660
0.006
0
6mer
361-380
0.005
0
6mer
1468-1477
0.004
0
RP5-1101C3.1
hsa-miR-145-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000592542
Biotype: antisense
Gene id: ENSG00000240499
Gene Name: RP5-1101C3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
502-528
0.030
3
LIPE-AS1
hsa-miR-145-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594624
Biotype: antisense
Gene id: ENSG00000213904
Gene Name: LIPE-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1328-1341
0.015
1
7mer
43-65
0.008
0
6mer
561-574
0.005
1
6mer
871-895
0.001
0
AC156455.1
hsa-miR-145-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535337
Biotype: retained_intron
Gene id: ENSG00000256546
Gene Name: AC156455.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
380-397
0.030
1
LINC01344
hsa-miR-145-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608183
Biotype: lincRNA
Gene id: ENSG00000228918
Gene Name: LINC01344
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2314-2337
0.013
3
7mer
889-897
0.010
4
6mer
2486-2511
0.004
0
6mer
1877-1890
0.002
1
RP1-257A7.4
hsa-miR-145-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606627
Biotype: antisense
Gene id: ENSG00000215022
Gene Name: RP1-257A7.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-309
0.026
1
6mer
490-516
0.004
0
RP11-363E6.4
hsa-miR-145-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606235
Biotype: lincRNA
Gene id: ENSG00000272425
Gene Name: RP11-363E6.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1596-1612
0.028
3
6mer
1023-1033
0.002
1
RP11-25I15.2
hsa-miR-145-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548764
Biotype: lincRNA
Gene id: ENSG00000257164
Gene Name: RP11-25I15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
389-408
0.029
1
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