LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
LINC00635
hsa-miR-145-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_024276.1
Biotype: lincRNA
Gene id: NR_024276.1 (gene)
Gene Name: LINC00635
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-78
0.027
0
6mer
793-806
0.003
2
XLOC_000927
hsa-miR-145-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001601
Biotype: transcript isomorph
Gene id: XLOC_000927
Gene Name: XLOC_000927
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
527-548
0.030
2
RP11-1437A8.4
hsa-miR-145-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563960
Biotype: lincRNA
Gene id: ENSG00000260827
Gene Name: RP11-1437A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1926-1936
0.018
0
6mer
1706-1724
0.013
0
RP5-890E16.2
hsa-miR-145-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578660
Biotype: retained_intron
Gene id: ENSG00000263412
Gene Name: RP5-890E16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1029-1046
0.018
1
6mer
576-591
0.006
3
6mer
1825-1840
0.002
1
6mer
2257-2274
0.002
1
6mer
1821-1837
0.001
0
6mer
1811-1832
0.001
1
CTD-2287N17.1
hsa-miR-145-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513859
Biotype: lincRNA
Gene id: ENSG00000248962
Gene Name: CTD-2287N17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
226-248
0.030
2
SATB1-AS1
hsa-miR-145-5p
0.768
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000596307
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
540-549
0.030
1
LINC00635
hsa-miR-145-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000488852
Biotype: lincRNA
Gene id: ENSG00000241469
Gene Name: LINC00635
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-78
0.027
0
6mer
793-806
0.003
2
LINC01487
hsa-miR-145-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462531
Biotype: lincRNA
Gene id: ENSG00000241336
Gene Name: LINC01487
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
752-776
0.030
1
AC008269.2
hsa-miR-145-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438070
Biotype: lincRNA
Gene id: ENSG00000229321
Gene Name: AC008269.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
546-560
0.030
1
RP11-989E6.10
hsa-miR-145-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568752
Biotype: lincRNA
Gene id: ENSG00000261200
Gene Name: RP11-989E6.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3847-3866
0.005
0
6mer
3299-3324
0.005
0
6mer
3099-3116
0.004
0
6mer
950-972
0.004
0
6mer
3489-3499
0.003
0
6mer
1991-2017
0.003
0
6mer
844-860
0.003
0
6mer
1607-1628
0.002
0
6mer
826-850
0.002
0
GRIK1-AS1
hsa-miR-145-5p
0.767
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000412579
Biotype: antisense
Gene id: ENSG00000174680
Gene Name: GRIK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
507-527
0.022
3
6mer
732-757
0.008
3
LINC01104
hsa-miR-145-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452354
Biotype: lincRNA
Gene id: ENSG00000232084
Gene Name: LINC01104
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
261-282
0.020
2
7mer
2694-2719
0.010
1
MEG3
hsa-miR-145-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000455286
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
466-481
0.030
2
TMEM191A
hsa-miR-145-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000450925
Biotype: lincRNA
Gene id: ENSG00000226287
Gene Name: TMEM191A
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-212
0.023
0
7mer
1422-1444
0.005
1
6mer
1690-1714
0.002
0
ZNF625-ZNF20
hsa-miR-145-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_037802.1
Biotype: sense
Gene id: NR_037802.1 (gene)
Gene Name: ZNF625-ZNF20
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3296-3306
0.009
1
7mer
2450-2460
0.006
1
6mer
3004-3018
0.004
2
6mer
1581-1593
0.002
3
6mer
2001-2014
0.002
1
6mer
1332-1344
0.002
3
6mer
1497-1509
0.001
2
6mer
1833-1849
0.001
3
6mer
1413-1425
0.001
2
6mer
1917-1931
0.001
1
RGS5
hsa-miR-145-5p
0.766
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000526176
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
99-115
0.030
1
GRIK1-AS1
hsa-miR-145-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000309331
Biotype: antisense
Gene id: ENSG00000174680
Gene Name: GRIK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
502-522
0.022
3
6mer
727-752
0.008
3
CTC-484P3.3
hsa-miR-145-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513849
Biotype: antisense
Gene id: ENSG00000249175
Gene Name: CTC-484P3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
437-462
0.016
0
8mer
475-501
0.011
0
6mer
728-750
0.003
1
LOC401557
hsa-miR-145-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_046107.1
Biotype: lincRNA
Gene id: NR_046107.1 (gene)
Gene Name: LOC401557
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
109-131
0.011
1
7mer
671-689
0.007
0
7mer
292-313
0.007
1
6mer
863-888
0.003
1
6mer
2867-2892
0.002
1
LINC00925
hsa-miR-145-5p
0.765
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558754
Biotype: lincRNA
Gene id: ENSG00000255571
Gene Name: LINC00925
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-87
0.030
0
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