LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
USP3-AS1
hsa-miR-145-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560350
Biotype: antisense
Gene id: ENSG00000259248
Gene Name: USP3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-132
0.031
1
XLOC_006839
hsa-miR-145-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014755
Biotype: transcript isomorph
Gene id: XLOC_006839
Gene Name: XLOC_006839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-433
0.031
Not Conserved
CTA-212A2.3
hsa-miR-145-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624264
Biotype: lincRNA
Gene id: ENSG00000279217
Gene Name: CTA-212A2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2119-2126
0.011
1
8mer
6479-6497
0.006
Not Conserved
7mer
7142-7155
0.005
0
6mer
701-718
0.002
1
6mer
14240-14264
0.002
0
6mer
3606-3623
0.002
Not Conserved
6mer
10151-10163
0.002
1
6mer
5262-5288
0.001
0
RP11-324O2.3
hsa-miR-145-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449782
Biotype: antisense
Gene id: ENSG00000232934
Gene Name: RP11-324O2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-196
0.031
1
PAX8-AS1
hsa-miR-145-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000623306
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-114
0.027
8
6mer
738-748
0.004
0
XLOC_012575
hsa-miR-145-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025765
Biotype: transcript isomorph
Gene id: XLOC_012575
Gene Name: XLOC_012575
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2699-2716
0.015
0
7mer
2490-2500
0.008
0
7mer
1621-1640
0.005
0
6mer
493-516
0.004
0
LL22NC03-86G7.1
hsa-miR-145-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34496-34519
0.003
3
6mer
28859-28882
0.003
10
7mer
9732-9753
0.003
2
7mer
2355-2380
0.002
0
6mer
7303-7319
0.002
0
6mer
2928-2953
0.002
4
6mer
18298-18321
0.002
3
6mer
14787-14811
0.001
0
7mer
33269-33292
0.001
1
6mer
4239-4249
0.001
1
6mer
22598-22609
0.001
1
6mer
36352-36378
0.001
1
6mer
14261-14280
0.001
1
6mer
35215-35242
0.001
1
6mer
6729-6745
0.001
0
6mer
9103-9123
0.001
0
6mer
9977-9986
0.001
1
6mer
21910-21926
0.001
1
6mer
5949-5976
0.001
1
6mer
3285-3312
0.001
0
6mer
21777-21798
0.001
1
MEG3
hsa-miR-145-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000398518
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
440-455
0.020
2
6mer
1401-1421
0.005
5
6mer
1409-1436
0.005
4
6mer
1491-1515
0.002
2
RP11-89H19.1
hsa-miR-145-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000380601
Biotype: antisense
Gene id: ENSG00000205537
Gene Name: RP11-89H19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
741-763
0.015
3
6mer
1179-1195
0.010
5
6mer
1027-1039
0.004
2
6mer
1042-1069
0.002
0
XLOC_011826
hsa-miR-145-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024507
Biotype: transcript isomorph
Gene id: XLOC_011826
Gene Name: XLOC_011826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7079-7099
0.015
2
7mer
9571-9591
0.007
2
6mer
8906-8933
0.003
1
6mer
4700-4705
0.003
1
6mer
1291-1315
0.002
0
6mer
6329-6354
0.001
Not Conserved
XLOC_005621
hsa-miR-145-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012090
Biotype: transcript isomorph
Gene id: XLOC_005621
Gene Name: XLOC_005621
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
628-654
0.021
1
7mer
1103-1113
0.007
0
6mer
1400-1414
0.003
Not Conserved
CCDC26
hsa-miR-145-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000446592
Biotype: lincRNA
Gene id: ENSG00000229140
Gene Name: CCDC26
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
647-659
0.018
1
7mer
1361-1382
0.008
0
6mer
1019-1028
0.005
1
NPHP3-ACAD11
hsa-miR-145-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037804.1
Biotype: sense
Gene id: NR_037804.1 (gene)
Gene Name: NPHP3-ACAD11
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3033-3059
0.014
10
9mer
2895-2910
0.006
1
6mer
1157-1174
0.004
10
6mer
3540-3557
0.002
0
6mer
5901-5925
0.002
5
7mer
2838-2851
0.002
2
6mer
5394-5419
0.001
2
CTD-2008P7.1
hsa-miR-145-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000564762
Biotype: lincRNA
Gene id: ENSG00000260777
Gene Name: CTD-2008P7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1000-1010
0.031
1
MEG3
hsa-miR-145-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046464.1
Biotype: lincRNA
Gene id: NR_046464.1 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-474
0.020
2
6mer
1354-1374
0.005
5
6mer
1362-1389
0.004
4
6mer
1444-1468
0.002
2
MEG3
hsa-miR-145-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556736
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-456
0.020
2
6mer
1402-1422
0.005
5
6mer
1410-1437
0.004
4
6mer
1492-1516
0.002
2
XLOC_008698
hsa-miR-145-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018414
Biotype: transcript isomorph
Gene id: XLOC_008698
Gene Name: XLOC_008698
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
701-726
0.031
1
XLOC_007221
hsa-miR-145-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014564
Biotype: transcript isomorph
Gene id: XLOC_007221
Gene Name: XLOC_007221
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
646-658
0.018
1
7mer
1360-1381
0.008
0
6mer
1018-1027
0.005
1
XLOC_002131
hsa-miR-145-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004286
Biotype: transcript isomorph
Gene id: XLOC_002131
Gene Name: XLOC_002131
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
571-594
0.031
1
RP4-671O14.7
hsa-miR-145-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1489-1511
0.006
2
8mer
12950-12974
0.006
1
6mer
546-565
0.004
0
6mer
459-479
0.004
0
6mer
7406-7414
0.002
0
6mer
14678-14699
0.002
1
7mer
9039-9052
0.002
0
6mer
1878-1892
0.002
3
6mer
1816-1831
0.001
3
6mer
7670-7681
0.001
0
6mer
13253-13272
0.001
Not Conserved
6mer
8797-8820
0.001
Not Conserved
6mer
11434-11454
0.001
0
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