LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
AC004540.4
hsa-miR-145-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451264
Biotype: antisense
Gene id: ENSG00000225792
Gene Name: AC004540.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
156-171
0.032
9
XLOC_003262
hsa-miR-145-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006666
Biotype: transcript isomorph
Gene id: XLOC_003262
Gene Name: XLOC_003262
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
312-328
0.032
1
RP11-596D21.1
hsa-miR-145-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000551799
Biotype: antisense
Gene id: ENSG00000257831
Gene Name: RP11-596D21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
931-957
0.026
4
6mer
782-787
0.006
0
MEG3
hsa-miR-145-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000423456
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-456
0.020
2
6mer
1522-1542
0.006
5
6mer
1530-1557
0.005
4
6mer
1612-1636
0.002
2
AC113617.1
hsa-miR-145-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000420701
Biotype: lincRNA
Gene id: ENSG00000228358
Gene Name: AC113617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-293
0.029
0
6mer
309-323
0.003
Not Conserved
ZNRF3-IT1
hsa-miR-145-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000412798
Biotype: sense_intronic
Gene id: ENSG00000235786
Gene Name: ZNRF3-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
237-262
0.021
1
7mer
500-525
0.008
1
6mer
153-172
0.003
1
RP11-549J18.1
hsa-miR-145-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505668
Biotype: sense_intronic
Gene id: ENSG00000251023
Gene Name: RP11-549J18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
374-391
0.029
1
6mer
1729-1740
0.002
2
AC007246.3
hsa-miR-145-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449569
Biotype: antisense
Gene id: ENSG00000231312
Gene Name: AC007246.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
288-311
0.018
7
8mer
970-992
0.007
0
6mer
572-593
0.003
2
6mer
897-921
0.002
1
6mer
423-438
0.002
1
RP1-278O22.1
hsa-miR-145-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000417299
Biotype: lincRNA
Gene id: ENSG00000224961
Gene Name: RP1-278O22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
195-217
0.032
3
SPTY2D1-AS1
hsa-miR-145-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000511927
Biotype: antisense
Gene id: ENSG00000247595
Gene Name: SPTY2D1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
550-563
0.032
1
AP000688.29
hsa-miR-145-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000422473
Biotype: lincRNA
Gene id: ENSG00000233393
Gene Name: AP000688.29
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
601-617
0.015
0
7mer
1210-1237
0.013
0
6mer
214-239
0.004
Not Conserved
MIR4519
hsa-miR-145-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570025
Biotype: antisense
Gene id: ENSG00000260083
Gene Name: MIR4519
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1181-1191
0.027
1
7mer
964-987
0.005
0
XLOC_010037
hsa-miR-145-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020749
Biotype: transcript isomorph
Gene id: XLOC_010037
Gene Name: XLOC_010037
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-128
0.019
Not Conserved
6mer
991-1005
0.007
1
8mer+mismatch
14-26
0.005
0
RP11-356I2.1
hsa-miR-145-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419220
Biotype: lincRNA
Gene id: ENSG00000234956
Gene Name: RP11-356I2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
635-659
0.027
1
6mer
305-332
0.005
4
RP11-356I2.1
hsa-miR-145-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000411615
Biotype: lincRNA
Gene id: ENSG00000234956
Gene Name: RP11-356I2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
669-693
0.027
1
6mer
305-332
0.005
4
XLOC_008420
hsa-miR-145-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018690
Biotype: transcript isomorph
Gene id: XLOC_008420
Gene Name: XLOC_008420
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2132-2154
0.025
0
6mer
57-81
0.004
0
6mer
1864-1888
0.003
1
RP11-120D5.1
hsa-miR-145-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000433747
Biotype: lincRNA
Gene id: ENSG00000234129
Gene Name: RP11-120D5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
150-165
0.032
0
XLOC_012685
hsa-miR-145-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026338
Biotype: transcript isomorph
Gene id: XLOC_012685
Gene Name: XLOC_012685
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
161-167
0.022
0
7mer
916-942
0.010
Not Conserved
TMEM9B-AS1
hsa-miR-145-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532599
Biotype: antisense
Gene id: ENSG00000254860
Gene Name: TMEM9B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-218
0.019
1
7mer
177-203
0.007
0
6mer
319-335
0.006
2
MIR4435-1HG
hsa-miR-145-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439362
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
125-150
0.017
1
6mer
1478-1504
0.004
1
6mer
321-341
0.004
0
6mer
740-749
0.004
1
6mer
949-971
0.002
1
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