LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
PRKCQ-AS1
hsa-miR-145-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608453
Biotype: lincRNA
Gene id: ENSG00000237943
Gene Name: PRKCQ-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
501-508
0.033
Not Conserved
RP11-251G23.5
hsa-miR-145-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609827
Biotype: antisense
Gene id: ENSG00000272604
Gene Name: RP11-251G23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2239-2251
0.026
1
6mer
2203-2227
0.004
1
6mer
1656-1677
0.002
1
XLOC_002432
hsa-miR-145-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004531
Biotype: transcript isomorph
Gene id: XLOC_002432
Gene Name: XLOC_002432
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Colon Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
835-849
0.027
5
6mer
871-894
0.006
1
PARD6G-AS1
hsa-miR-145-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586421
Biotype: antisense
Gene id: ENSG00000267270
Gene Name: PARD6G-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2679-2703
0.019
1
6mer
3285-3302
0.006
2
7mer
291-305
0.005
0
6mer
2405-2421
0.002
1
6mer
1113-1123
0.001
0
AC113617.1
hsa-miR-145-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000426240
Biotype: lincRNA
Gene id: ENSG00000228358
Gene Name: AC113617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-243
0.030
0
6mer
259-273
0.003
Not Conserved
XLOC_002948
hsa-miR-145-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007049
Biotype: transcript isomorph
Gene id: XLOC_002948
Gene Name: XLOC_002948
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
46-61
0.014
9
6mer
273-288
0.008
4
6mer
110-131
0.006
1
6mer
1362-1382
0.003
1
6mer
676-702
0.002
1
LINC01304
hsa-miR-145-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588796
Biotype: lincRNA
Gene id: ENSG00000237401
Gene Name: LINC01304
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
335-342
0.032
1
RP5-994D16.11
hsa-miR-145-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438946
Biotype: lincRNA
Gene id: ENSG00000274386
Gene Name: RP5-994D16.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
258-277
0.032
5
RP1-111D6.2
hsa-miR-145-5p
0.790
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000424421
Biotype: antisense
Gene id: ENSG00000225924
Gene Name: RP1-111D6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-187
0.025
0
6mer
525-550
0.004
0
6mer
513-529
0.003
0
HCG23
hsa-miR-145-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000426643
Biotype: antisense
Gene id: ENSG00000228962
Gene Name: HCG23
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-39
0.022
2
7mer
19-45
0.010
0
USP3-AS1
hsa-miR-145-5p
0.789
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559357
Biotype: antisense
Gene id: ENSG00000259248
Gene Name: USP3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-132
0.032
1
MEG3
hsa-miR-145-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000412736
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
419-434
0.021
2
6mer
1359-1379
0.005
5
6mer
1367-1394
0.005
4
6mer
1449-1473
0.002
2
SATB1-AS1
hsa-miR-145-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598390
Biotype: antisense
Gene id: ENSG00000228956
Gene Name: SATB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-367
0.032
1
RP11-379P15.1
hsa-miR-145-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499752
Biotype: lincRNA
Gene id: ENSG00000246820
Gene Name: RP11-379P15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2983-3006
0.025
3
6mer
3105-3120
0.003
1
6mer
3175-3200
0.003
5
6mer
2014-2030
0.001
0
RP11-455J20.3
hsa-miR-145-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608680
Biotype: antisense
Gene id: ENSG00000273240
Gene Name: RP11-455J20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
402-422
0.032
1
RP11-96K19.2
hsa-miR-145-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440689
Biotype: antisense
Gene id: ENSG00000232811
Gene Name: RP11-96K19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1845-1866
0.021
3
8mer
1011-1023
0.008
1
6mer
1863-1884
0.003
2
XLOC_011949
hsa-miR-145-5p
0.788
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024661
Biotype: transcript isomorph
Gene id: XLOC_011949
Gene Name: XLOC_011949
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
638-664
0.032
7
XLOC_004536
hsa-miR-145-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010079
Biotype: transcript isomorph
Gene id: XLOC_004536
Gene Name: XLOC_004536
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
834-854
0.032
8
XLOC_000605
hsa-miR-145-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001323
Biotype: transcript isomorph
Gene id: XLOC_000605
Gene Name: XLOC_000605
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-322
0.022
1
7mer
1092-1107
0.007
2
6mer
1041-1057
0.003
1
RP5-994D16.11
hsa-miR-145-5p
0.787
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000536543
Biotype: lincRNA
Gene id: ENSG00000274386
Gene Name: RP5-994D16.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
809-828
0.032
5
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