LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
MEG3
hsa-miR-145-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000451743
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-456
0.021
2
6mer
1272-1292
0.006
5
6mer
1280-1307
0.005
4
6mer
1362-1386
0.002
2
RP11-458K10.2
hsa-miR-145-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000470532
Biotype: lincRNA
Gene id: ENSG00000240973
Gene Name: RP11-458K10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
293-303
0.033
11
XLOC_006468
hsa-miR-145-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012911
Biotype: transcript isomorph
Gene id: XLOC_006468
Gene Name: XLOC_006468
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2949-2971
0.012
1
7mer
1120-1137
0.008
0
6mer
3231-3246
0.006
1
6mer
2544-2566
0.003
0
6mer
448-460
0.003
0
MEG3
hsa-miR-145-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000521404
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
441-456
0.021
2
6mer
1158-1178
0.006
5
6mer
1166-1193
0.005
4
6mer
1248-1272
0.002
2
RP11-503L19.1
hsa-miR-145-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504874
Biotype: lincRNA
Gene id: ENSG00000250357
Gene Name: RP11-503L19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
492-500
0.033
0
RP11-290F5.2
hsa-miR-145-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000317596
Biotype: lincRNA
Gene id: ENSG00000180712
Gene Name: RP11-290F5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Colon Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
630-647
0.030
1
6mer
2112-2124
0.003
1
LINC01258
hsa-miR-145-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512517
Biotype: lincRNA
Gene id: ENSG00000249534
Gene Name: LINC01258
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1440-1464
0.023
3
6mer
1732-1742
0.007
2
6mer
943-964
0.003
2
RP11-736K20.6
hsa-miR-145-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_038905.1
Biotype: lincRNA
Gene id: NR_038905.1 (gene)
Gene Name: RP11-736K20.6
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
704-724
0.025
1
7mer
283-300
0.008
0
XLOC_008330
hsa-miR-145-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017593
Biotype: transcript isomorph
Gene id: XLOC_008330
Gene Name: XLOC_008330
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
181-194
0.017
0
6mer
932-944
0.016
0
RP11-736K20.6
hsa-miR-145-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499504
Biotype: lincRNA
Gene id: ENSG00000246523
Gene Name: RP11-736K20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
706-726
0.025
1
7mer
285-302
0.008
0
RP11-216M21.7
hsa-miR-145-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
271-286
0.016
0
6mer
2873-2894
0.011
0
6mer
1647-1668
0.006
0
RP11-116D17.1
hsa-miR-145-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547948
Biotype: lincRNA
Gene id: ENSG00000257726
Gene Name: RP11-116D17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
245-259
0.033
1
DNM3OS
hsa-miR-145-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038397.2
Biotype: antisense
Gene id: NR_038397.2 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3678-3705
0.009
9
7mer
982-992
0.008
4
7mer
5042-5054
0.006
0
7mer
260-286
0.005
1
6mer
3094-3111
0.002
2
6mer
2018-2031
0.002
8
RP11-168K9.1
hsa-miR-145-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530177
Biotype: lincRNA
Gene id: ENSG00000255546
Gene Name: RP11-168K9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
496-514
0.033
Not Conserved
XLOC_002760
hsa-miR-145-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006154
Biotype: transcript isomorph
Gene id: XLOC_002760
Gene Name: XLOC_002760
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1569-1589
0.033
1
MIR4519
hsa-miR-145-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564901
Biotype: antisense
Gene id: ENSG00000260083
Gene Name: MIR4519
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-409
0.027
1
7mer
182-205
0.006
0
RP11-298H24.1
hsa-miR-145-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000424701
Biotype: lincRNA
Gene id: ENSG00000229775
Gene Name: RP11-298H24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-291
0.033
1
CTD-2311B13.5
hsa-miR-145-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000613990
Biotype: antisense
Gene id: ENSG00000275563
Gene Name: CTD-2311B13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
757-775
0.033
1
AC113617.1
hsa-miR-145-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000448804
Biotype: lincRNA
Gene id: ENSG00000228358
Gene Name: AC113617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-160
0.030
0
6mer
176-190
0.003
Not Conserved
AC102948.2
hsa-miR-145-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000412360
Biotype: lincRNA
Gene id: ENSG00000226364
Gene Name: AC102948.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
511-527
0.022
2
6mer
151-175
0.006
1
6mer
383-387
0.005
0
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