LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
LINC00320
hsa-miR-145-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000452561
Biotype: lincRNA
Gene id: ENSG00000224924
Gene Name: LINC00320
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
335-341
0.026
1
7mer
977-999
0.008
1
XLOC_013639
hsa-miR-145-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028604
Biotype: transcript isomorph
Gene id: XLOC_013639
Gene Name: XLOC_013639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-248
0.017
1
7mer
300-315
0.012
1
6mer
145-160
0.004
0
PCBP1-AS1
hsa-miR-145-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000444320
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-149
0.027
0
6mer
355-381
0.006
1
XLOC_003405
hsa-miR-145-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006771
Biotype: transcript isomorph
Gene id: XLOC_003405
Gene Name: XLOC_003405
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2324-2343
0.007
0
8mer
1761-1771
0.003
Not Conserved
7mer
6325-6340
0.002
Not Conserved
8mer
1996-2009
0.002
Not Conserved
8mer
2184-2197
0.002
Not Conserved
8mer
2277-2301
0.002
0
7mer
6514-6529
0.002
Not Conserved
7mer
5290-5305
0.002
Not Conserved
8mer
1902-1915
0.002
Not Conserved
8mer
1855-1879
0.002
Not Conserved
8mer
1949-1962
0.002
Not Conserved
8mer
2090-2114
0.002
Not Conserved
8mer
2137-2150
0.002
Not Conserved
7mer
4773-4788
0.001
Not Conserved
6mer
1612-1627
0.001
Not Conserved
RP4-586O15.1
hsa-miR-145-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423410
Biotype: lincRNA
Gene id: ENSG00000228504
Gene Name: RP4-586O15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
324-345
0.033
2
LINC00665
hsa-miR-145-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000412740
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
115-130
0.033
1
MEG3
hsa-miR-145-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046465.2
Biotype: lincRNA
Gene id: NR_046465.2 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-474
0.021
2
6mer
1328-1348
0.006
5
6mer
1336-1363
0.005
4
6mer
1418-1442
0.002
2
RP11-1H15.2
hsa-miR-145-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533659
Biotype: antisense
Gene id: ENSG00000255476
Gene Name: RP11-1H15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
512-538
0.033
1
XLOC_011374
hsa-miR-145-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023541
Biotype: transcript isomorph
Gene id: XLOC_011374
Gene Name: XLOC_011374
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
539-560
0.029
0
6mer
711-733
0.005
0
XLOC_010651
hsa-miR-145-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021516
Biotype: transcript isomorph
Gene id: XLOC_010651
Gene Name: XLOC_010651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3290-3311
0.016
0
8mer
2152-2167
0.010
1
6mer
3329-3353
0.005
0
6mer
2304-2314
0.003
0
MEG3
hsa-miR-145-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_002766.2
Biotype: lincRNA
Gene id: NR_002766.2 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-474
0.021
2
6mer
1290-1310
0.006
5
6mer
1298-1325
0.005
4
6mer
1380-1404
0.002
2
XLOC_006568
hsa-miR-145-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012923
Biotype: transcript isomorph
Gene id: XLOC_006568
Gene Name: XLOC_006568
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-302
0.033
11
SVIL-AS1
hsa-miR-145-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609413
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
204-217
0.033
1
LINC00550
hsa-miR-145-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_038878.1
Biotype: lincRNA
Gene id: NR_038878.1 (gene)
Gene Name: LINC00550
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3293-3314
0.016
0
8mer
2155-2170
0.010
1
6mer
3332-3356
0.005
0
6mer
2307-2317
0.003
0
HAS2-AS1
hsa-miR-145-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520043
Biotype: antisense
Gene id: ENSG00000248690
Gene Name: HAS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-139
0.033
1
CTD-2616J11.14
hsa-miR-145-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600765
Biotype: lincRNA
Gene id: ENSG00000268889
Gene Name: CTD-2616J11.14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
365-380
0.027
1
6mer
226-247
0.006
2
RP11-71N10.1
hsa-miR-145-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000485006
Biotype: lincRNA
Gene id: ENSG00000239922
Gene Name: RP11-71N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
115-138
0.033
9
TTTY5
hsa-miR-145-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000400581
Biotype: lincRNA
Gene id: ENSG00000215560
Gene Name: TTTY5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
182-195
0.017
0
6mer
933-945
0.016
0
LINC00661
hsa-miR-145-5p
0.798
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000549354
Biotype: lincRNA
Gene id: ENSG00000205396
Gene Name: LINC00661
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
989-1009
0.025
1
6mer
1386-1397
0.004
1
6mer
1643-1660
0.003
1
6mer
1391-1417
0.001
0
MEG3
hsa-miR-145-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_046471.1
Biotype: lincRNA
Gene id: NR_046471.1 (gene)
Gene Name: MEG3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-474
0.021
2
6mer
1214-1234
0.006
5
6mer
1222-1249
0.005
4
6mer
1304-1328
0.002
2
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