LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
PTOV1-AS1
hsa-miR-145-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_040037.1
Biotype: antisense
Gene id: NR_040037.1 (gene)
Gene Name: PTOV1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-429
0.018
3
9mer
1231-1253
0.014
2
6mer
1363-1384
0.003
1
PTOV1-AS1
hsa-miR-145-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596521
Biotype: antisense
Gene id: ENSG00000268006
Gene Name: PTOV1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
416-435
0.018
3
9mer
1237-1259
0.014
2
6mer
1369-1390
0.003
1
CTD-2017D11.1
hsa-miR-145-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597683
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
823-844
0.021
1
6mer
213-233
0.014
1
SRGAP3-AS2
hsa-miR-145-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000450920
Biotype: antisense
Gene id: ENSG00000228723
Gene Name: SRGAP3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-43
0.016
1
7mer
1011-1037
0.014
2
6mer
53-69
0.004
1
RP11-536C10.7
hsa-miR-145-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000548050
Biotype: lincRNA
Gene id: ENSG00000257504
Gene Name: RP11-536C10.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
693-718
0.019
0
7mer
810-834
0.013
0
6mer
592-611
0.003
0
CTD-3012A18.1
hsa-miR-145-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530389
Biotype: lincRNA
Gene id: ENSG00000255029
Gene Name: CTD-3012A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
377-402
0.035
2
AC113617.1
hsa-miR-145-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000419264
Biotype: lincRNA
Gene id: ENSG00000228358
Gene Name: AC113617.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-109
0.031
0
6mer
125-139
0.004
Not Conserved
XLOC_004413
hsa-miR-145-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009987
Biotype: transcript isomorph
Gene id: XLOC_004413
Gene Name: XLOC_004413
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
308-326
0.034
5
NAALADL2-AS3
hsa-miR-145-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436929
Biotype: retained_intron
Gene id: ENSG00000230292
Gene Name: NAALADL2-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-134
0.030
0
6mer
232-250
0.005
0
XLOC_010985
hsa-miR-145-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022695
Biotype: transcript isomorph
Gene id: XLOC_010985
Gene Name: XLOC_010985
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
238-253
0.019
0
7mer
160-166
0.015
1
XLOC_006848
hsa-miR-145-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014765
Biotype: transcript isomorph
Gene id: XLOC_006848
Gene Name: XLOC_006848
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Colon Normal/Primary
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-54
0.034
0
LOC101927446
hsa-miR-145-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110085.1
Biotype: sense
Gene id: NR_110085.1 (gene)
Gene Name: LOC101927446
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2565-2579
0.031
1
6mer
1003-1024
0.003
1
AC091199.1
hsa-miR-145-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000615743
Biotype: lincRNA
Gene id: ENSG00000275173
Gene Name: AC091199.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
388-398
0.014
1
8mer
191-204
0.013
1
6mer
286-305
0.007
2
C14orf182
hsa-miR-145-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000528300
Biotype: lincRNA
Gene id: ENSG00000214900
Gene Name: C14orf182
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2704-2727
0.026
0
6mer
3093-3109
0.004
0
6mer
2700-2719
0.003
1
ST8SIA6-AS1
hsa-miR-145-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000377597
Biotype: antisense
Gene id: ENSG00000204832
Gene Name: ST8SIA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1269-1292
0.021
0
8mer
427-449
0.010
1
6mer
1022-1032
0.003
0
RP11-54H7.4
hsa-miR-145-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000618966
Biotype: lincRNA
Gene id: ENSG00000275216
Gene Name: RP11-54H7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-336
0.021
0
7mer
2747-2773
0.005
1
7mer
2395-2413
0.005
1
6mer
3555-3570
0.003
0
7mer
2770-2784
0.001
Not Conserved
RP11-316I3.2
hsa-miR-145-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414765
Biotype: lincRNA
Gene id: ENSG00000238054
Gene Name: RP11-316I3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-175
0.034
1
LOC100128885
hsa-miR-145-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3805-3826
0.010
Not Conserved
7mer
590-607
0.009
0
6mer
842-857
0.005
0
7mer
1628-1651
0.004
0
6mer
1336-1360
0.004
0
6mer
1829-1854
0.003
0
DLEU7-AS1
hsa-miR-145-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413510
Biotype: antisense
Gene id: ENSG00000237152
Gene Name: DLEU7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1625-1634
0.034
1
XLOC_009933
hsa-miR-145-5p
0.807
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020616
Biotype: transcript isomorph
Gene id: XLOC_009933
Gene Name: XLOC_009933
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-417
0.034
1
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