LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
LINC01116
hsa-miR-145-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000295549
Biotype: lincRNA
Gene id: ENSG00000163364
Gene Name: LINC01116
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-96
0.026
1
6mer
8-25
0.010
2
NAALADL2-AS3
hsa-miR-145-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000453180
Biotype: antisense
Gene id: ENSG00000230292
Gene Name: NAALADL2-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-139
0.030
0
6mer
237-255
0.005
0
RP11-829H16.3
hsa-miR-145-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555108
Biotype: antisense
Gene id: ENSG00000258525
Gene Name: RP11-829H16.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
859-881
0.024
0
6mer
1677-1703
0.006
1
6mer
1508-1529
0.004
4
SHANK3
hsa-miR-145-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000262795
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6588-6604
0.009
9
6mer
393-419
0.007
11
6mer
588-611
0.007
9
6mer
69-80
0.003
3
6mer
1145-1170
0.002
3
6mer
3290-3305
0.002
6
6mer
3581-3596
0.002
5
6mer
4546-4568
0.001
7
6mer
6178-6202
0.001
1
6mer
1317-1335
0.000
Not Conserved
RP11-572M11.4
hsa-miR-145-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463017
Biotype: antisense
Gene id: ENSG00000240057
Gene Name: RP11-572M11.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
342-362
0.035
1
LINC01005
hsa-miR-145-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441691
Biotype: antisense
Gene id: ENSG00000228564
Gene Name: LINC01005
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
182-204
0.024
1
6mer
464-479
0.011
1
RP11-223P11.3
hsa-miR-145-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000599979
Biotype: antisense
Gene id: ENSG00000223528
Gene Name: RP11-223P11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-33
0.022
1
7mer
660-673
0.007
0
8mer
199-217
0.007
1
AC092839.3
hsa-miR-145-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000433475
Biotype: antisense
Gene id: ENSG00000228108
Gene Name: AC092839.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-242
0.035
2
MUC19
hsa-miR-145-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000423284
Biotype: retained_intron
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
496-513
0.028
0
6mer
166-183
0.007
1
RP5-994D16.11
hsa-miR-145-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421630
Biotype: lincRNA
Gene id: ENSG00000274386
Gene Name: RP5-994D16.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
374-393
0.035
5
XLOC_014172
hsa-miR-145-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029529
Biotype: transcript isomorph
Gene id: XLOC_014172
Gene Name: XLOC_014172
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
662-687
0.012
0
7mer
28-46
0.008
Not Conserved
7mer
239-260
0.005
1
7mer
36-54
0.003
0
6mer
4009-4024
0.002
1
6mer
317-338
0.002
0
6mer
2181-2198
0.001
Not Conserved
6mer
590-616
0.001
Not Conserved
LINC00174
hsa-miR-145-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416572
Biotype: lincRNA
Gene id: ENSG00000179406
Gene Name: LINC00174
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
511-525
0.035
1
PCBP1-AS1
hsa-miR-145-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416068
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
113-121
0.029
0
6mer
327-353
0.006
1
XLOC_009111
hsa-miR-145-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019278
Biotype: transcript isomorph
Gene id: XLOC_009111
Gene Name: XLOC_009111
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-466
0.035
0
GRIK1-AS1
hsa-miR-145-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000413131
Biotype: antisense
Gene id: ENSG00000174680
Gene Name: GRIK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-208
0.020
3
6mer
413-438
0.009
3
6mer
27-51
0.006
1
PCAT1
hsa-miR-145-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519319
Biotype: lincRNA
Gene id: ENSG00000253438
Gene Name: PCAT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
684-711
0.035
0
AC005537.2
hsa-miR-145-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000588324
Biotype: lincRNA
Gene id: ENSG00000232006
Gene Name: AC005537.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
614-627
0.023
1
6mer
621-635
0.008
0
6mer
567-582
0.004
0
RP11-565F19.2
hsa-miR-145-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000607496
Biotype: sense_intronic
Gene id: ENSG00000271851
Gene Name: RP11-565F19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1755-1780
0.026
5
7mer
434-450
0.008
0
RP11-597A11.2
hsa-miR-145-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000547175
Biotype: lincRNA
Gene id: ENSG00000257395
Gene Name: RP11-597A11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
776-801
0.018
0
7mer
660-684
0.014
1
6mer
883-902
0.003
0
MIR142
hsa-miR-145-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579003
Biotype: antisense
Gene id: ENSG00000265206
Gene Name: MIR142
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-36
0.021
1
6mer
389-393
0.009
9
6mer
124-142
0.003
3
6mer
829-853
0.002
0
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