LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
RP11-178L8.5
hsa-miR-145-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561709
Biotype: sense_intronic
Gene id: ENSG00000261697
Gene Name: RP11-178L8.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
330-349
0.031
1
6mer
46-68
0.005
1
AC092669.3
hsa-miR-145-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428647
Biotype: lincRNA
Gene id: ENSG00000232164
Gene Name: AC092669.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1271-1296
0.026
Not Conserved
7mer
1585-1610
0.010
Not Conserved
MIR519A2
hsa-miR-145-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597619
Biotype: lincRNA
Gene id: ENSG00000269842
Gene Name: MIR519A2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
220-242
0.026
1
6mer
1989-2004
0.006
1
6mer
37-60
0.004
0
RP11-744K17.2
hsa-miR-145-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582527
Biotype: lincRNA
Gene id: ENSG00000266885
Gene Name: RP11-744K17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2652-2660
0.028
0
8mer
3259-3275
0.008
Not Conserved
MUC19
hsa-miR-145-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000424466
Biotype: processed_transcript
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
781-798
0.021
0
6mer
206-228
0.006
1
6mer
451-468
0.004
1
6mer
1016-1032
0.004
0
AC007182.6
hsa-miR-145-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000455232
Biotype: antisense
Gene id: ENSG00000224721
Gene Name: AC007182.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-87
0.030
0
6mer
1851-1876
0.006
9
XLOC_000403
hsa-miR-145-5p
0.821
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001146
Biotype: transcript isomorph
Gene id: XLOC_000403
Gene Name: XLOC_000403
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
186-201
0.016
7
7mer
519-537
0.007
3
6mer
1913-1929
0.004
0
6mer
1836-1855
0.003
0
6mer
108-124
0.003
1
6mer
1247-1273
0.002
1
TSIX
hsa-miR-145-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34369-34386
0.007
2
8mer
25936-25943
0.007
2
8mer
31429-31442
0.005
2
7mer
23846-23858
0.004
1
6mer
34167-34184
0.003
4
7mer
24173-24200
0.003
1
6mer
24954-24958
0.002
3
6mer
3616-3632
0.002
0
6mer
21057-21080
0.002
2
6mer
4076-4095
0.001
0
6mer
31494-31519
0.001
1
ERVH48-1
hsa-miR-145-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1920-1943
0.028
0
6mer
1063-1083
0.007
0
RP11-147L13.12
hsa-miR-145-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000613178
Biotype: lincRNA
Gene id: ENSG00000274561
Gene Name: RP11-147L13.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
424-436
0.035
1
THUMPD3-AS1
hsa-miR-145-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000521609
Biotype: antisense
Gene id: ENSG00000206573
Gene Name: THUMPD3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-97
0.023
3
7mer
759-778
0.013
0
LINC00293
hsa-miR-145-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518278
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
355-376
0.018
1
7mer
482-501
0.018
0
SVIL-AS1
hsa-miR-145-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608994
Biotype: antisense
Gene id: ENSG00000224597
Gene Name: SVIL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
179-192
0.035
1
RP11-548L20.1
hsa-miR-145-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514877
Biotype: lincRNA
Gene id: ENSG00000248685
Gene Name: RP11-548L20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-203
0.029
0
6mer
386-407
0.006
1
XLOC_006734
hsa-miR-145-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014463
Biotype: transcript isomorph
Gene id: XLOC_006734
Gene Name: XLOC_006734
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
197-209
0.008
3
8mer
2279-2299
0.007
2
6mer
378-394
0.006
2
6mer
231-243
0.004
1
7mer
1574-1589
0.004
1
6mer
2631-2652
0.003
2
6mer
2234-2259
0.003
1
6mer
1819-1839
0.001
0
XLOC_013703
hsa-miR-145-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028028
Biotype: transcript isomorph
Gene id: XLOC_013703
Gene Name: XLOC_013703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1762-1779
0.015
0
6mer
1992-2007
0.014
0
6mer
924-939
0.005
0
AC007740.1
hsa-miR-145-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446838
Biotype: antisense
Gene id: ENSG00000237750
Gene Name: AC007740.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2818-2834
0.014
1
7mer
342-355
0.009
1
8mer
1164-1173
0.008
1
6mer
2495-2511
0.004
1
XLOC_013936
hsa-miR-145-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029013
Biotype: transcript isomorph
Gene id: XLOC_013936
Gene Name: XLOC_013936
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
740-759
0.035
1
RP11-642D21.1
hsa-miR-145-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519805
Biotype: sense_intronic
Gene id: ENSG00000254141
Gene Name: RP11-642D21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
320-344
0.023
5
6mer
206-217
0.007
6
6mer
575-595
0.005
1
CTB-131B5.5
hsa-miR-145-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607850
Biotype: retained_intron
Gene id: ENSG00000254363
Gene Name: CTB-131B5.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2919-2929
0.016
2
7mer
2241-2262
0.005
2
8mer
957-982
0.004
1
6mer
4718-4737
0.004
5
6mer
945-962
0.002
3
7mer
2274-2297
0.001
1
6mer
4228-4250
0.001
0
6mer
4494-4518
0.001
0
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