LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
CTD-2006C1.2
hsa-miR-145-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592187
Biotype: retained_intron
Gene id: ENSG00000219665
Gene Name: CTD-2006C1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
878-885
0.016
0
7mer
3915-3938
0.014
0
7mer
1306-1321
0.004
0
6mer
1198-1218
0.002
Not Conserved
HAS2-AS1
hsa-miR-145-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518865
Biotype: antisense
Gene id: ENSG00000248690
Gene Name: HAS2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-470
0.036
1
TMX2-CTNND1
hsa-miR-145-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037646.1
Biotype: sense
Gene id: NR_037646.1 (gene)
Gene Name: TMX2-CTNND1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
262-285
0.009
12
6mer
5810-5822
0.008
4
7mer
4978-4992
0.007
8
6mer
3058-3077
0.004
10
6mer
3446-3468
0.003
10
6mer
3287-3312
0.002
6
6mer
2635-2648
0.002
8
LINC00664
hsa-miR-145-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599078
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3032-3048
0.017
0
6mer
3228-3245
0.007
1
6mer
2709-2731
0.006
1
6mer
1657-1668
0.003
0
7mer
1681-1705
0.002
1
6mer
521-542
0.002
Not Conserved
SNHG14
hsa-miR-145-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000580438
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1244-1249
0.036
2
RP11-594N15.2
hsa-miR-145-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522302
Biotype: lincRNA
Gene id: ENSG00000254266
Gene Name: RP11-594N15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1581-1599
0.014
1
7mer
1729-1754
0.008
0
6mer
277-303
0.008
1
6mer
1896-1910
0.006
1
SRGAP3-AS2
hsa-miR-145-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600323
Biotype: antisense
Gene id: ENSG00000228723
Gene Name: SRGAP3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1222-1248
0.018
2
7mer
57-81
0.015
1
6mer
91-107
0.004
1
LINC00710
hsa-miR-145-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000428520
Biotype: lincRNA
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
82-99
0.032
0
6mer
902-916
0.004
1
FAM27B
hsa-miR-145-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027422.1
Biotype: lincRNA
Gene id: NR_027422.1 (gene)
Gene Name: FAM27B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
169-195
0.023
0
6mer
194-213
0.013
0
DLX6-AS1
hsa-miR-145-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8152-8177
0.006
2
7mer
2400-2406
0.006
0
8mer
13736-13763
0.006
1
8mer
7374-7390
0.005
3
7mer
9448-9463
0.003
0
7mer
12986-12994
0.003
2
6mer
9228-9247
0.002
1
6mer
3666-3681
0.002
2
6mer
13878-13894
0.001
6
6mer
7369-7390
0.000
2
RP11-91J19.3
hsa-miR-145-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607549
Biotype: antisense
Gene id: ENSG00000272293
Gene Name: RP11-91J19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
552-577
0.036
5
RP11-397A16.3
hsa-miR-145-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585985
Biotype: lincRNA
Gene id: ENSG00000267172
Gene Name: RP11-397A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
263-283
0.027
1
6mer
425-445
0.005
0
6mer
676-695
0.004
0
XLOC_007057
hsa-miR-145-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014978
Biotype: transcript isomorph
Gene id: XLOC_007057
Gene Name: XLOC_007057
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
935-945
0.021
1
7mer
140-155
0.009
1
6mer
13-25
0.007
2
RP11-1O2.1
hsa-miR-145-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578560
Biotype: retained_intron
Gene id: ENSG00000263547
Gene Name: RP11-1O2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-110
0.021
0
7mer
162-182
0.011
1
6mer
243-269
0.004
1
WI2-8325B5.1
hsa-miR-145-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000617215
Biotype: lincRNA
Gene id: ENSG00000276786
Gene Name: WI2-8325B5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
667-684
0.034
1
6mer
405-424
0.002
1
AC004988.1
hsa-miR-145-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415237
Biotype: antisense
Gene id: ENSG00000203446
Gene Name: AC004988.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
15-23
0.032
1
6mer
1316-1338
0.004
1
CTA-796E4.5
hsa-miR-145-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19653-19669
0.004
0
8mer
2406-2425
0.004
1
7mer
26915-26928
0.004
1
7mer
20592-20608
0.003
1
6mer
5788-5799
0.003
1
6mer
13891-13907
0.002
0
6mer
29836-29859
0.002
1
6mer
4983-5000
0.002
1
6mer
9100-9111
0.002
1
6mer
25864-25884
0.002
2
6mer
15763-15784
0.002
1
6mer
17954-17973
0.001
1
6mer
28809-28833
0.001
0
6mer
6370-6393
0.001
1
6mer
20617-20639
0.001
2
6mer
28509-28534
0.001
Not Conserved
6mer
8708-8727
0.001
2
6mer
28078-28105
0.001
Not Conserved
6mer
28580-28595
0.000
Not Conserved
RP11-262H14.3
hsa-miR-145-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000612590
Biotype: lincRNA
Gene id: ENSG00000234665
Gene Name: RP11-262H14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
280-302
0.036
0
XLOC_009558
hsa-miR-145-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019764
Biotype: transcript isomorph
Gene id: XLOC_009558
Gene Name: XLOC_009558
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
512-536
0.036
1
FLJ31104
hsa-miR-145-5p
0.822
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500093
Biotype: antisense
Gene id: ENSG00000227908
Gene Name: FLJ31104
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
446-463
0.032
1
7mer
137-159
0.003
0
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