LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
RP11-5K23.5
hsa-miR-145-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000419446
Biotype: antisense
Gene id: ENSG00000224515
Gene Name: RP11-5K23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-277
0.022
2
7mer
34-51
0.012
0
6mer
254-278
0.004
0
RP11-231E4.5
hsa-miR-145-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000618739
Biotype: sense_intronic
Gene id: ENSG00000276934
Gene Name: RP11-231E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
145-161
0.037
0
RP1-257A15.1
hsa-miR-145-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418665
Biotype: antisense
Gene id: ENSG00000225437
Gene Name: RP1-257A15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
633-651
0.037
1
CECR7
hsa-miR-145-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609596
Biotype: lincRNA
Gene id: ENSG00000237438
Gene Name: CECR7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
725-740
0.027
1
6mer
590-606
0.008
1
6mer
603-615
0.002
0
RP11-123O10.4
hsa-miR-145-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535721
Biotype: lincRNA
Gene id: ENSG00000256248
Gene Name: RP11-123O10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-73
0.032
3
6mer
28-52
0.005
2
XLOC_012254
hsa-miR-145-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025435
Biotype: transcript isomorph
Gene id: XLOC_012254
Gene Name: XLOC_012254
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-45
0.037
2
RP11-354I10.1
hsa-miR-145-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431369
Biotype: lincRNA
Gene id: ENSG00000225775
Gene Name: RP11-354I10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
548-562
0.033
4
6mer
192-208
0.004
0
RP11-173D14.3
hsa-miR-145-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000430931
Biotype: lincRNA
Gene id: ENSG00000229495
Gene Name: RP11-173D14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1757-1777
0.011
0
8mer
712-737
0.010
1
9mer
1158-1179
0.008
1
6mer
2412-2439
0.006
1
6mer
1272-1284
0.002
0
CTD-2507G9.1
hsa-miR-145-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531798
Biotype: lincRNA
Gene id: ENSG00000255243
Gene Name: CTD-2507G9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-80
0.022
3
7mer
160-178
0.015
2
TGFB2-AS1
hsa-miR-145-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000414452
Biotype: antisense
Gene id: ENSG00000232480
Gene Name: TGFB2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-210
0.037
3
AC009229.6
hsa-miR-145-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417213
Biotype: lincRNA
Gene id: ENSG00000229160
Gene Name: AC009229.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-86
0.037
0
AC002456.2
hsa-miR-145-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412669
Biotype: antisense
Gene id: ENSG00000223969
Gene Name: AC002456.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-113
0.037
1
SC22CB-109E1.1
hsa-miR-145-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623290
Biotype: lincRNA
Gene id: ENSG00000279582
Gene Name: SC22CB-109E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8472-8487
0.014
1
9mer
2151-2172
0.012
1
9mer
7663-7675
0.006
1
6mer
8936-8954
0.002
1
6mer
6207-6228
0.002
1
6mer
9539-9560
0.001
Not Conserved
XLOC_004456
hsa-miR-145-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009444
Biotype: transcript isomorph
Gene id: XLOC_004456
Gene Name: XLOC_004456
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
561-582
0.033
0
6mer
217-233
0.004
1
LINC00238
hsa-miR-145-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000389594
Biotype: lincRNA
Gene id: ENSG00000196553
Gene Name: LINC00238
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
604-624
0.019
4
7mer
77-89
0.018
2
XLOC_012723
hsa-miR-145-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026371
Biotype: transcript isomorph
Gene id: XLOC_012723
Gene Name: XLOC_012723
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
443-458
0.021
0
7mer
510-530
0.011
1
6mer
591-617
0.005
1
LINC01304
hsa-miR-145-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453880
Biotype: lincRNA
Gene id: ENSG00000237401
Gene Name: LINC01304
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
167-174
0.037
1
RP11-215G15.5
hsa-miR-145-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607560
Biotype: lincRNA
Gene id: ENSG00000272016
Gene Name: RP11-215G15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-270
0.029
2
6mer
3035-3046
0.005
1
6mer
771-788
0.002
1
6mer
1414-1432
0.001
0
ZNF883
hsa-miR-145-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427548
Biotype: lincRNA
Gene id: ENSG00000228623
Gene Name: ZNF883
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
348-358
0.010
4
6mer
600-610
0.009
5
6mer
264-281
0.008
5
6mer
684-699
0.006
5
6mer
852-869
0.004
2
SHANK3
hsa-miR-145-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000414786
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
6803-6819
0.008
9
6mer
620-646
0.006
11
6mer
815-838
0.006
9
6mer
7374-7386
0.005
1
6mer
296-307
0.003
3
6mer
3769-3784
0.002
5
6mer
3478-3493
0.002
6
6mer
1372-1397
0.002
3
6mer
4734-4756
0.001
7
6mer
6393-6417
0.001
1
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