LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
AC010096.1
hsa-miR-145-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443897
Biotype: lincRNA
Gene id: ENSG00000234597
Gene Name: AC010096.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
125-148
0.034
3
6mer
682-697
0.005
2
RP11-89N17.1
hsa-miR-145-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000311067
Biotype: lincRNA
Gene id: ENSG00000173862
Gene Name: RP11-89N17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
444-467
0.022
4
7mer
724-750
0.014
3
6mer
403-412
0.003
1
XLOC_011011
hsa-miR-145-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00023103
Biotype: transcript isomorph
Gene id: XLOC_011011
Gene Name: XLOC_011011
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-220
0.032
0
6mer
90-110
0.006
2
RP11-28F1.2
hsa-miR-145-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588307
Biotype: sense_intronic
Gene id: ENSG00000267701
Gene Name: RP11-28F1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
543-555
0.033
4
6mer
250-273
0.006
3
XLOC_002759
hsa-miR-145-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006930
Biotype: transcript isomorph
Gene id: XLOC_002759
Gene Name: XLOC_002759
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
386-409
0.023
0
7mer
6390-6409
0.011
Not Conserved
7mer
3579-3591
0.003
0
6mer
2982-3009
0.001
1
RP11-47I22.2
hsa-miR-145-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000508827
Biotype: lincRNA
Gene id: ENSG00000250548
Gene Name: RP11-47I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5031-5038
0.013
1
7mer
705-719
0.013
3
6mer
4795-4811
0.006
3
7mer
3131-3148
0.003
0
7mer
3310-3335
0.002
0
7mer
3481-3498
0.002
1
AC004158.3
hsa-miR-145-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000624327
Biotype: lincRNA
Gene id: ENSG00000260664
Gene Name: AC004158.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
373-390
0.035
4
6mer
1094-1111
0.003
0
XLOC_011780
hsa-miR-145-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024252
Biotype: transcript isomorph
Gene id: XLOC_011780
Gene Name: XLOC_011780
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
373-390
0.035
4
6mer
1094-1111
0.003
0
RP11-324O2.3
hsa-miR-145-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000594870
Biotype: antisense
Gene id: ENSG00000232934
Gene Name: RP11-324O2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-73
0.038
1
RP11-355I22.2
hsa-miR-145-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554252
Biotype: lincRNA
Gene id: ENSG00000258903
Gene Name: RP11-355I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
523-545
0.038
2
CTD-2516F10.2
hsa-miR-145-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000504206
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
175-181
0.015
1
6mer
459-478
0.006
2
7mer
3770-3788
0.006
1
7mer
2258-2280
0.003
1
6mer
3358-3373
0.003
1
6mer
3692-3716
0.002
1
6mer
2526-2541
0.002
3
6mer
3315-3331
0.001
1
RP11-406A20.4
hsa-miR-145-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000426593
Biotype: lincRNA
Gene id: ENSG00000227555
Gene Name: RP11-406A20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
545-563
0.024
0
6mer
2558-2572
0.005
0
6mer
2110-2125
0.004
1
6mer
501-517
0.003
0
6mer
2075-2100
0.002
1
XLOC_004270
hsa-miR-145-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009857
Biotype: transcript isomorph
Gene id: XLOC_004270
Gene Name: XLOC_004270
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3401-3422
0.031
2
6mer
1091-1102
0.003
1
6mer
390-408
0.003
0
6mer
1618-1640
0.002
0
AC093375.1
hsa-miR-145-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428651
Biotype: lincRNA
Gene id: ENSG00000226383
Gene Name: AC093375.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
304-330
0.038
1
XLOC_005737
hsa-miR-145-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011496
Biotype: transcript isomorph
Gene id: XLOC_005737
Gene Name: XLOC_005737
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3213-3237
0.017
2
7mer
5576-5584
0.007
2
6mer
306-324
0.004
1
6mer
5318-5334
0.004
3
6mer
1285-1311
0.002
1
6mer
830-856
0.002
0
6mer
5454-5477
0.002
1
6mer
2062-2089
0.001
Not Conserved
RP11-145G20.1
hsa-miR-145-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513393
Biotype: lincRNA
Gene id: ENSG00000248510
Gene Name: RP11-145G20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-239
0.034
2
6mer
306-316
0.004
1
RP11-15H20.6
hsa-miR-145-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598323
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-91
0.026
0
7mer
146-165
0.012
0
XLOC_006588
hsa-miR-145-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013943
Biotype: transcript isomorph
Gene id: XLOC_006588
Gene Name: XLOC_006588
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
33-58
0.038
1
BVES-AS1
hsa-miR-145-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000369122
Biotype: antisense
Gene id: ENSG00000203808
Gene Name: BVES-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
214-225
0.014
2
6mer
1679-1697
0.008
1
6mer
1692-1705
0.007
1
6mer
509-528
0.004
2
6mer
802-818
0.003
2
6mer
547-569
0.002
1
LOC100506639
hsa-miR-145-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_102752.1
Biotype: sense
Gene id: NR_102752.1 (gene)
Gene Name: LOC100506639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5-28
0.024
1
6mer
1043-1060
0.014
1
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