LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-145-5p


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Gene
miRNA
Score
DIANA Links
CTC-543D15.7
hsa-miR-145-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000619353
Biotype: lincRNA
Gene id: ENSG00000276483
Gene Name: CTC-543D15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
814-820
0.017
1
6mer
49-61
0.008
1
7mer
452-469
0.008
0
6mer
1225-1229
0.007
3
XLOC_009668
hsa-miR-145-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021074
Biotype: transcript isomorph
Gene id: XLOC_009668
Gene Name: XLOC_009668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
427-448
0.027
1
7mer
489-502
0.008
0
6mer
947-974
0.005
1
RP11-744J10.3
hsa-miR-145-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517343
Biotype: lincRNA
Gene id: ENSG00000253479
Gene Name: RP11-744J10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
607-633
0.040
1
STX18-AS1
hsa-miR-145-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502693
Biotype: antisense
Gene id: ENSG00000247708
Gene Name: STX18-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
627-646
0.040
0
RP11-793H13.8
hsa-miR-145-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547717
Biotype: retained_intron
Gene id: ENSG00000257379
Gene Name: RP11-793H13.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
771-787
0.033
12
6mer
711-738
0.007
10
RP11-661G16.2
hsa-miR-145-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553712
Biotype: antisense
Gene id: ENSG00000258716
Gene Name: RP11-661G16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
270-288
0.039
3
RP11-340I6.8
hsa-miR-145-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450544
Biotype: lincRNA
Gene id: ENSG00000226581
Gene Name: RP11-340I6.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
80-94
0.021
0
6mer
73-90
0.014
0
6mer
217-238
0.004
Not Conserved
RP11-675F6.3
hsa-miR-145-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521623
Biotype: lincRNA
Gene id: ENSG00000253361
Gene Name: RP11-675F6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-346
0.033
1
6mer
216-228
0.006
2
RP11-1149M10.2
hsa-miR-145-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519412
Biotype: lincRNA
Gene id: ENSG00000253214
Gene Name: RP11-1149M10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
428-446
0.039
3
RP11-14D22.1
hsa-miR-145-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000487097
Biotype: lincRNA
Gene id: ENSG00000244564
Gene Name: RP11-14D22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-326
0.039
4
LINC00675
hsa-miR-145-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581851
Biotype: lincRNA
Gene id: ENSG00000263429
Gene Name: LINC00675
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1162-1183
0.027
4
7mer
197-223
0.009
Not Conserved
6mer
1318-1327
0.002
0
6mer
168-191
0.002
Not Conserved
RP11-753B14.1
hsa-miR-145-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000426166
Biotype: lincRNA
Gene id: ENSG00000237494
Gene Name: RP11-753B14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-43
0.039
1
RP11-93K22.13
hsa-miR-145-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000514010
Biotype: lincRNA
Gene id: ENSG00000248243
Gene Name: RP11-93K22.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
409-428
0.035
0
6mer
531-558
0.004
1
RP11-794P6.1
hsa-miR-145-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528614
Biotype: sense_intronic
Gene id: ENSG00000255428
Gene Name: RP11-794P6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2510-2516
0.033
3
8mer
1415-1426
0.007
0
AC079613.1
hsa-miR-145-5p
0.850
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431708
Biotype: sense_overlapping
Gene id: ENSG00000223523
Gene Name: AC079613.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13-27
0.029
5
6mer
49-72
0.006
1
6mer
416-425
0.004
1
XLOC_009595
hsa-miR-145-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019794
Biotype: transcript isomorph
Gene id: XLOC_009595
Gene Name: XLOC_009595
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
777-797
0.033
6
7mer
215-230
0.006
0
CTD-3028N15.1
hsa-miR-145-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556389
Biotype: antisense
Gene id: ENSG00000249163
Gene Name: CTD-3028N15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
208-226
0.032
0
6mer
96-116
0.006
2
RP11-1081M5.2
hsa-miR-145-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000566892
Biotype: lincRNA
Gene id: ENSG00000260484
Gene Name: RP11-1081M5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1581-1601
0.029
0
7mer
574-589
0.007
1
6mer
774-797
0.003
1
FAM27C
hsa-miR-145-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027421.1
Biotype: sense
Gene id: NR_027421.1 (gene)
Gene Name: FAM27C
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
461-487
0.023
0
6mer
486-505
0.016
0
XLOC_006197
hsa-miR-145-5p
0.849
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013557
Biotype: transcript isomorph
Gene id: XLOC_006197
Gene Name: XLOC_006197
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-145-5p
Sequence: guccaguuuucccaggaaucccu
MirBase ID: MIMAT0000437
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-222
0.039
0
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