LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-307P5.1
hsa-miR-143-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000442094
Biotype: lincRNA
Gene id: ENSG00000227681
Gene Name: RP11-307P5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-235
0.059
2
TUG1
hsa-miR-143-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000569384
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
105-129
0.059
9
RP5-1092A11.2
hsa-miR-143-3p
0.950
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416554
Biotype: antisense
Gene id: ENSG00000235131
Gene Name: RP5-1092A11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-35
0.059
5
RP11-356B19.11
hsa-miR-143-3p
0.949
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000607259
Biotype: sense_intronic
Gene id: ENSG00000271833
Gene Name: RP11-356B19.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
132-155
0.053
3
6mer
193-217
0.005
1
LINC00284
hsa-miR-143-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000423211
Biotype: lincRNA
Gene id: ENSG00000233725
Gene Name: LINC00284
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3078-3096
0.058
2
CTC-260E6.6
hsa-miR-143-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592022
Biotype: antisense
Gene id: ENSG00000267383
Gene Name: CTC-260E6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-98
0.034
1
7mer
337-361
0.024
0
RP11-108M9.3
hsa-miR-143-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438002
Biotype: lincRNA
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2198-2217
0.037
0
6mer
2454-2480
0.010
1
6mer
567-587
0.006
1
6mer
1363-1387
0.005
1
LL22NC03-86G7.1
hsa-miR-143-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
26059-26083
0.006
1
6mer
25513-25534
0.005
12
6mer
37558-37581
0.004
0
7mer
13769-13785
0.004
1
6mer
37426-37444
0.004
0
6mer
37222-37245
0.003
1
7mer
1361-1386
0.002
1
7mer
22044-22071
0.002
1
7mer
19462-19482
0.002
1
6mer
15050-15066
0.001
3
6mer
27393-27414
0.001
0
6mer
22249-22265
0.001
0
6mer
14166-14186
0.001
1
6mer
34492-34503
0.001
0
6mer
21354-21370
0.001
1
6mer
8428-8445
0.001
1
6mer
8538-8542
0.001
1
6mer
36264-36278
0.001
0
6mer
11620-11644
0.001
0
6mer
2535-2559
0.000
0
XLOC_011292
hsa-miR-143-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023265
Biotype: transcript isomorph
Gene id: XLOC_011292
Gene Name: XLOC_011292
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1739-1755
0.055
1
6mer
1048-1061
0.003
3
AC011747.4
hsa-miR-143-3p
0.947
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454224
Biotype: lincRNA
Gene id: ENSG00000236008
Gene Name: AC011747.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
727-749
0.030
0
7mer
8514-8535
0.009
1
7mer
3400-3424
0.008
1
7mer
1946-1965
0.004
0
6mer
8131-8147
0.002
0
6mer
770-791
0.001
0
6mer
7729-7741
0.001
0
6mer
3568-3591
0.001
0
6mer
2913-2939
0.001
1
6mer
2812-2833
0.001
0
6mer
2298-2316
0.001
0
RP11-442N1.2
hsa-miR-143-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000563865
Biotype: lincRNA
Gene id: ENSG00000261763
Gene Name: RP11-442N1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2447-2472
0.055
1
6mer
2064-2089
0.003
5
XLOC_011063
hsa-miR-143-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022778
Biotype: transcript isomorph
Gene id: XLOC_011063
Gene Name: XLOC_011063
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-56
0.041
0
6mer
131-155
0.011
1
6mer
592-616
0.006
1
XLOC_005716
hsa-miR-143-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012168
Biotype: transcript isomorph
Gene id: XLOC_005716
Gene Name: XLOC_005716
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
927-938
0.054
1
6mer
54-77
0.004
1
AC008697.1
hsa-miR-143-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515337
Biotype: lincRNA
Gene id: ENSG00000249738
Gene Name: AC008697.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1422-1441
0.019
1
8mer
1395-1408
0.017
1
6mer
1523-1534
0.009
4
6mer
1535-1557
0.007
1
6mer
710-720
0.003
4
6mer
828-841
0.002
1
RP5-899B16.1
hsa-miR-143-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000431609
Biotype: lincRNA
Gene id: ENSG00000231426
Gene Name: RP5-899B16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
430-437
0.051
5
6mer
121-144
0.006
2
CTA-342B11.3
hsa-miR-143-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
698-723
0.009
2
7mer
19830-19855
0.009
0
7mer
10469-10493
0.008
1
7mer
13511-13527
0.005
1
7mer
19325-19348
0.004
0
8mer
5445-5463
0.003
0
6mer
3585-3598
0.002
1
7mer
5691-5717
0.002
1
6mer
23631-23654
0.002
0
7mer
9753-9772
0.002
0
6mer
1721-1746
0.002
0
6mer
19665-19678
0.002
0
6mer
6486-6509
0.001
1
6mer
12390-12409
0.001
1
6mer
19175-19198
0.001
1
6mer
4600-4612
0.001
Not Conserved
6mer
23157-23174
0.001
Not Conserved
6mer
22959-22986
0.001
Not Conserved
6mer
11582-11607
0.001
0
6mer
20506-20530
0.001
0
6mer
5453-5471
0.001
2
MGC27345
hsa-miR-143-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_046216.1
Biotype: sense
Gene id: NR_046216.1 (gene)
Gene Name: MGC27345
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2674-2696
0.031
0
8mer
7779-7801
0.010
1
7mer
6714-6734
0.004
1
7mer
8259-8268
0.004
1
6mer
2105-2109
0.002
1
6mer
3683-3697
0.002
2
6mer
8524-8542
0.001
1
6mer
6855-6874
0.001
1
6mer
7424-7449
0.001
0
RP11-28G8.1
hsa-miR-143-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000570335
Biotype: antisense
Gene id: ENSG00000262833
Gene Name: RP11-28G8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
442-466
0.028
1
8mer
95-121
0.018
1
7mer
2903-2918
0.009
0
6mer
1026-1043
0.002
1
FLJ31306
hsa-miR-143-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554309
Biotype: antisense
Gene id: ENSG00000257621
Gene Name: FLJ31306
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
275-293
0.054
0
6mer
4-22
0.003
0
XLOC_003130
hsa-miR-143-3p
0.943
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007175
Biotype: transcript isomorph
Gene id: XLOC_003130
Gene Name: XLOC_003130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
388-413
0.057
1
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