LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
XLOC_003646
hsa-miR-143-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008869
Biotype: transcript isomorph
Gene id: XLOC_003646
Gene Name: XLOC_003646
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-103
0.027
2
7mer
28-43
0.017
0
7mer
538-551
0.017
1
RP11-19C24.1
hsa-miR-143-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513540
Biotype: lincRNA
Gene id: ENSG00000272304
Gene Name: RP11-19C24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
279-304
0.055
2
6mer
39-53
0.006
1
XLOC_013010
hsa-miR-143-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1138-1163
0.036
0
6mer
395-411
0.012
0
6mer
922-936
0.008
0
6mer
969-993
0.006
0
XLOC_008295
hsa-miR-143-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3197-3220
0.019
0
6mer
5174-5187
0.016
0
7mer
1898-1920
0.014
0
8mer
4400-4426
0.009
Not Conserved
7mer
2216-2241
0.004
Not Conserved
RP11-373E16.3
hsa-miR-143-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000497988
Biotype: sense_intronic
Gene id: ENSG00000244738
Gene Name: RP11-373E16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2224-2248
0.045
1
8mer
1958-1980
0.011
0
6mer
2985-3008
0.003
0
6mer
1467-1482
0.001
2
TTTY15
hsa-miR-143-3p
0.956
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3197-3220
0.019
0
6mer
5174-5187
0.016
0
7mer
1898-1920
0.014
0
8mer
4400-4426
0.009
Not Conserved
7mer
2216-2241
0.004
Not Conserved
UCA1
hsa-miR-143-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000397381
Biotype: lincRNA
Gene id: ENSG00000214049
Gene Name: UCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
346-362
0.039
1
7mer
1921-1934
0.014
0
7mer
844-857
0.008
0
AC009120.5
hsa-miR-143-3p
0.955
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564455
Biotype: lincRNA
Gene id: ENSG00000260884
Gene Name: AC009120.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-201
0.056
1
6mer
324-339
0.004
0
RP11-108M9.3
hsa-miR-143-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453554
Biotype: lincRNA
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1259-1278
0.039
0
6mer
24-48
0.011
1
6mer
1515-1541
0.011
1
CTC-546K23.1
hsa-miR-143-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000597452
Biotype: lincRNA
Gene id: ENSG00000229855
Gene Name: CTC-546K23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
604-624
0.053
Not Conserved
6mer
671-690
0.007
1
XLOC_005905
hsa-miR-143-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012350
Biotype: transcript isomorph
Gene id: XLOC_005905
Gene Name: XLOC_005905
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
310-333
0.060
1
RP1-32I10.10
hsa-miR-143-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000406912
Biotype: lincRNA
Gene id: ENSG00000220702
Gene Name: RP1-32I10.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
16-36
0.060
0
LINC00865
hsa-miR-143-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000448490
Biotype: lincRNA
Gene id: ENSG00000232229
Gene Name: LINC00865
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-226
0.055
4
6mer
98-118
0.005
1
RP5-875O13.1
hsa-miR-143-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415386
Biotype: lincRNA
Gene id: ENSG00000233421
Gene Name: RP5-875O13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
271-290
0.039
0
6mer
1501-1525
0.011
1
6mer
10-36
0.009
1
CTD-2291D10.1
hsa-miR-143-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000564534
Biotype: lincRNA
Gene id: ENSG00000261615
Gene Name: CTD-2291D10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
74-97
0.056
Not Conserved
6mer
242-266
0.004
Not Conserved
FAM66C
hsa-miR-143-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000420514
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
581-598
0.060
0
RP1-257A15.1
hsa-miR-143-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418665
Biotype: antisense
Gene id: ENSG00000225437
Gene Name: RP1-257A15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1209-1228
0.060
1
FLJ36777
hsa-miR-143-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_027441.1
Biotype: lincRNA
Gene id: NR_027441.1 (gene)
Gene Name: FLJ36777
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
551-578
0.046
1
6mer
397-413
0.005
1
6mer
1394-1411
0.005
1
6mer
246-261
0.004
0
AC008103.4
hsa-miR-143-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623570
Biotype: sense_intronic
Gene id: ENSG00000279987
Gene Name: AC008103.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
761-785
0.033
1
7mer
713-738
0.019
1
6mer
681-703
0.007
1
MIR4534
hsa-miR-143-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2530-2555
0.010
0
7mer
27847-27871
0.007
1
7mer
13855-13875
0.005
Not Conserved
8mer
17286-17302
0.005
0
7mer
54424-54443
0.003
0
6mer
48013-48022
0.002
5
6mer
27681-27704
0.002
1
7mer
29315-29331
0.002
0
6mer
11781-11793
0.002
1
6mer
47451-47473
0.002
1
6mer
42581-42593
0.002
2
6mer
33983-33999
0.001
3
6mer
27518-27541
0.001
1
6mer
49550-49571
0.001
1
7mer
49892-49910
0.001
1
6mer
10674-10690
0.001
2
6mer
25689-25707
0.001
5
6mer
37930-37951
0.001
2
6mer
13689-13712
0.001
0
6mer
49358-49381
0.001
1
6mer
40920-40937
0.001
0
6mer
29437-29461
0.001
0
6mer
14848-14873
0.001
1
6mer
30442-30456
0.001
1
6mer
1152-1176
0.001
0
6mer
7783-7807
0.001
1
6mer
16705-16724
0.001
0
6mer
26051-26070
0.000
0
6mer
10716-10738
0.000
1
6mer
30475-30494
0.000
0
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