LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-338I21.1
hsa-miR-143-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000606511
Biotype: antisense
Gene id: ENSG00000271933
Gene Name: RP11-338I21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1815-1840
0.066
7
CTB-193M12.3
hsa-miR-143-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000576454
Biotype: sense_intronic
Gene id: ENSG00000262380
Gene Name: CTB-193M12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
139-163
0.066
0
XLOC_003641
hsa-miR-143-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008193
Biotype: transcript isomorph
Gene id: XLOC_003641
Gene Name: XLOC_003641
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
161-176
0.022
1
8mer
1190-1212
0.021
1
7mer
941-960
0.006
1
8mer
2571-2594
0.005
1
6mer
329-341
0.004
Not Conserved
6mer
383-396
0.003
0
6mer
3904-3918
0.003
1
6mer
3120-3143
0.001
0
6mer
3034-3060
0.001
0
RP11-108M9.3
hsa-miR-143-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451828
Biotype: lincRNA
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
150-169
0.046
0
6mer
406-432
0.011
1
6mer
50-74
0.008
1
LOXL1-AS1
hsa-miR-143-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565689
Biotype: antisense
Gene id: ENSG00000261801
Gene Name: LOXL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
38-54
0.065
1
CTD-2358C21.3
hsa-miR-143-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563338
Biotype: lincRNA
Gene id: ENSG00000260568
Gene Name: CTD-2358C21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
272-283
0.047
1
6mer
107-133
0.017
1
LINC01470
hsa-miR-143-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522300
Biotype: lincRNA
Gene id: ENSG00000249484
Gene Name: LINC01470
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-489
0.060
2
6mer
1914-1933
0.004
0
RP13-57D9.3
hsa-miR-143-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000454131
Biotype: lincRNA
Gene id: ENSG00000228160
Gene Name: RP13-57D9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
412-433
0.064
1
RP11-672L10.1
hsa-miR-143-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000564872
Biotype: lincRNA
Gene id: ENSG00000259837
Gene Name: RP11-672L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-49
0.056
1
6mer
22-49
0.007
4
RP11-418J17.1
hsa-miR-143-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413531
Biotype: antisense
Gene id: ENSG00000231365
Gene Name: RP11-418J17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
690-708
0.063
2
AL133493.2
hsa-miR-143-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441095
Biotype: lincRNA
Gene id: ENSG00000233922
Gene Name: AL133493.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5753-5770
0.025
1
8mer
6641-6661
0.024
Not Conserved
7mer
6195-6218
0.008
1
6mer
602-627
0.004
1
6mer
5825-5841
0.002
0
XLOC_005763
hsa-miR-143-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012210
Biotype: transcript isomorph
Gene id: XLOC_005763
Gene Name: XLOC_005763
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
57-72
0.063
0
XLOC_001343
hsa-miR-143-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002818
Biotype: transcript isomorph
Gene id: XLOC_001343
Gene Name: XLOC_001343
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2593-2612
0.047
1
7mer
872-896
0.012
0
6mer
705-729
0.004
1
RP11-135A24.4
hsa-miR-143-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000412085
Biotype: antisense
Gene id: ENSG00000233825
Gene Name: RP11-135A24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
107-122
0.062
11
RP11-156L14.1
hsa-miR-143-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577270
Biotype: antisense
Gene id: ENSG00000265702
Gene Name: RP11-156L14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
524-550
0.045
4
8mer
2272-2283
0.013
2
7mer
1633-1652
0.004
2
RP5-944M2.3
hsa-miR-143-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539969
Biotype: lincRNA
Gene id: ENSG00000214043
Gene Name: RP5-944M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
115-138
0.055
1
7mer
1300-1319
0.008
1
KB-1674E1.1
hsa-miR-143-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623776
Biotype: sense_intronic
Gene id: ENSG00000280413
Gene Name: KB-1674E1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
689-705
0.049
1
7mer
4280-4293
0.008
1
6mer
4242-4260
0.003
1
6mer
432-458
0.002
0
TTTY15
hsa-miR-143-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3164-3187
0.019
0
6mer
5141-5154
0.016
0
7mer
1865-1887
0.014
0
8mer
4367-4393
0.010
Not Conserved
7mer
2183-2208
0.004
Not Conserved
LINC00298
hsa-miR-143-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_015405.1
Biotype: lincRNA
Gene id: NR_015405.1 (gene)
Gene Name: LINC00298
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-48
0.062
2
RP11-778J15.1
hsa-miR-143-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509322
Biotype: antisense
Gene id: ENSG00000250062
Gene Name: RP11-778J15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
640-660
0.036
0
7mer
86-105
0.025
3
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