LncBase Experimental v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
PWAR1
hsa-miR-143-3p
0.596
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: NR_022009.1
Biotype: lincRNA
Gene id: NR_022009.1 (gene)
Gene Name: PWAR1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:25136258-25136286
exon
HITS-CLIP
DIRECT
LncBasev2
PWAR6
hsa-miR-143-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000552334
Biotype: lincRNA
Gene id: ENSG00000257151
Gene Name: PWAR6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:25034411-25034439
exon
HITS-CLIP
DIRECT
LncBasev2
PWARSN
hsa-miR-143-3p
0.636
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: NR_022011.1
Biotype: sense
Gene id: NR_022011.1 (gene)
Gene Name: PWARSN
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:24983371-24983399
exon
HITS-CLIP
DIRECT
LncBasev2
RFPL1S
hsa-miR-143-3p
0.620
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000461286
Biotype: antisense
Gene id: ENSG00000225465
Gene Name: RFPL1S
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:29438200-29438228
exon
HITS-CLIP
DIRECT
LncBasev2
22:29440589-29440617
exon
HITS-CLIP
DIRECT
LncBasev2
22:29439276-29439304
exon
HITS-CLIP
DIRECT
LncBasev2
RFPL1S
hsa-miR-143-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: NR_002727.2
Biotype: antisense
Gene id: NR_002727.2 (gene)
Gene Name: RFPL1S
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:29440589-29440617
exon
HITS-CLIP
DIRECT
LncBasev2
22:29439276-29439304
exon
HITS-CLIP
DIRECT
LncBasev2
22:29438200-29438228
exon
HITS-CLIP
DIRECT
LncBasev2
RHOT1P1
hsa-miR-143-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 18
Transcript: ENST00000582468
Biotype: processed_pseudogene
Gene id: ENSG00000266145
Gene Name: RHOT1P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
18:14222280-14222308
exon
HITS-CLIP
DIRECT
LncBasev2
RHOT1P3
hsa-miR-143-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 13
Transcript: ENST00000436571
Biotype: processed_pseudogene
Gene id: ENSG00000242756
Gene Name: RHOT1P3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
13:18837799-18837827
exon
HITS-CLIP
DIRECT
LncBasev2
RNASEK-C17orf49
hsa-miR-143-3p
0.394
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: NR_037717.1
Biotype: sense
Gene id: NR_037717.1 (gene)
Gene Name: RNASEK-C17orf49
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Balakrishnan I et al. 2014
Bone Marrow
HS5
IP
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:7014481-7014509
exon
HITS-CLIP
DIRECT
LncBasev2
RNF139-AS1
hsa-miR-143-3p
0.654
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000499418
Biotype: lincRNA
Gene id: ENSG00000245149
Gene Name: RNF139-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:124462806-124462834
exon
HITS-CLIP
DIRECT
LncBasev2
RNF139-AS1
hsa-miR-143-3p
0.659
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: NR_108047.1
Biotype: lincRNA
Gene id: NR_108047.1 (gene)
Gene Name: RNF139-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:124462806-124462834
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-1006G14.4
hsa-miR-143-3p
0.699
mTTBlnPmP
IP

Gene Details
Chromosome: 15
Transcript: ENST00000566291
Biotype: sense_overlapping
Gene id: ENSG00000260534
Gene Name: RP11-1006G14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:72591028-72591056
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-1033A18.1
hsa-miR-143-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000530115
Biotype: processed_pseudogene
Gene id: ENSG00000224411
Gene Name: RP11-1033A18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:27890884-27890912
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-1096G20.5
hsa-miR-143-3p
0.871
mTTBlnPmP
IP

Gene Details
Chromosome: 17
Transcript: ENST00000580270
Biotype: antisense
Gene id: ENSG00000266368
Gene Name: RP11-1096G20.5
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:11953940-11953968
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-111M22.3
hsa-miR-143-3p
0.687
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000572035
Biotype: lincRNA
Gene id: ENSG00000255135
Gene Name: RP11-111M22.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:76441368-76441396
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-111M22.4
hsa-miR-143-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000606980
Biotype: lincRNA
Gene id: ENSG00000272301
Gene Name: RP11-111M22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:76389890-76389918
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-131L12.4
hsa-miR-143-3p
0.607
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000610630
Biotype: lincRNA
Gene id: ENSG00000275409
Gene Name: RP11-131L12.4
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:118430279-118430307
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-196O16.1
hsa-miR-143-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000609163
Biotype: lincRNA
Gene id: ENSG00000273477
Gene Name: RP11-196O16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:16087932-16087960
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-215G15.5
hsa-miR-143-3p
0.618
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000607560
Biotype: lincRNA
Gene id: ENSG00000272016
Gene Name: RP11-215G15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:10655027-10655055
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-231G3.1
hsa-miR-143-3p
0.653
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000607723
Biotype: lincRNA
Gene id: ENSG00000272308
Gene Name: RP11-231G3.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
5:60866862-60866890
exon
HITS-CLIP
DIRECT
LncBasev2
RP11-253I19.3
hsa-miR-143-3p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000544086
Biotype: lincRNA
Gene id: ENSG00000255670
Gene Name: RP11-253I19.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Publication
Tissue
Cell Type
Methods
Boudreau RL et al. 2014
Brain
-
IP
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:12491329-12491357
exon
HITS-CLIP
DIRECT
LncBasev2
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