LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
TUG1
hsa-miR-143-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000519077
Biotype: antisense
Gene id: ENSG00000253352
Gene Name: TUG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1376-1400
0.016
9
6mer
185-204
0.004
3
6mer
3503-3520
0.003
5
6mer
3118-3141
0.001
0
XLOC_013811
hsa-miR-143-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028451
Biotype: transcript isomorph
Gene id: XLOC_013811
Gene Name: XLOC_013811
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
752-770
0.013
1
7mer
829-850
0.007
1
6mer
178-197
0.004
0
DLX6-AS1
hsa-miR-143-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2204-2223
0.009
2
7mer
4404-4409
0.006
1
7mer
9064-9089
0.003
2
6mer
3496-3519
0.002
2
6mer
6104-6118
0.002
2
6mer
1172-1189
0.001
1
6mer
9905-9924
0.001
0
6mer
4312-4328
0.001
3
XLOC_007035
hsa-miR-143-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9124-9148
0.007
0
7mer
1801-1825
0.007
0
6mer
3795-3818
0.002
1
6mer
6883-6901
0.002
0
6mer
11343-11361
0.002
0
6mer
1968-1992
0.001
0
6mer
15144-15160
0.001
Not Conserved
6mer
10609-10633
0.001
0
6mer
13548-13574
0.001
0
6mer
6565-6589
0.001
1
AC024084.1
hsa-miR-143-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440744
Biotype: lincRNA
Gene id: ENSG00000230649
Gene Name: AC024084.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-49
0.018
0
6mer
385-401
0.006
1
RP11-685G9.2
hsa-miR-143-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559539
Biotype: antisense
Gene id: ENSG00000259514
Gene Name: RP11-685G9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
535-553
0.025
12
CTD-2270L9.4
hsa-miR-143-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570080
Biotype: lincRNA
Gene id: ENSG00000260136
Gene Name: CTD-2270L9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
661-685
0.025
0
CTD-2270L9.4
hsa-miR-143-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562842
Biotype: lincRNA
Gene id: ENSG00000260136
Gene Name: CTD-2270L9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-375
0.025
0
XLOC_004775
hsa-miR-143-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010297
Biotype: transcript isomorph
Gene id: XLOC_004775
Gene Name: XLOC_004775
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
440-466
0.025
1
XLOC_010215
hsa-miR-143-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021415
Biotype: transcript isomorph
Gene id: XLOC_010215
Gene Name: XLOC_010215
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-63
0.015
1
6mer
28-40
0.005
1
7mer
278-292
0.004
0
AC098973.1
hsa-miR-143-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432163
Biotype: lincRNA
Gene id: ENSG00000229243
Gene Name: AC098973.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1489-1510
0.012
1
7mer
2166-2184
0.008
2
6mer
673-682
0.004
1
RP11-524K22.1
hsa-miR-143-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000426547
Biotype: lincRNA
Gene id: ENSG00000233470
Gene Name: RP11-524K22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-57
0.025
8
XLOC_000542
hsa-miR-143-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001254
Biotype: transcript isomorph
Gene id: XLOC_000542
Gene Name: XLOC_000542
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
788-808
0.015
2
6mer
494-508
0.006
3
6mer
755-774
0.004
0
DARS-AS1
hsa-miR-143-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601586
Biotype: antisense
Gene id: ENSG00000231890
Gene Name: DARS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
728-743
0.021
1
7mer
356-381
0.004
1
SOX2-OT
hsa-miR-143-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000498731
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1002-1023
0.021
4
6mer
2534-2543
0.003
8
LINC00589
hsa-miR-143-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000506121
Biotype: lincRNA
Gene id: ENSG00000251191
Gene Name: LINC00589
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1244-1254
0.025
1
RP11-147C23.1
hsa-miR-143-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000593954
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
575-596
0.022
1
6mer
445-467
0.002
0
DNM3OS
hsa-miR-143-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038397.2
Biotype: antisense
Gene id: NR_038397.2 (gene)
Gene Name: DNM3OS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
489-504
0.012
1
6mer
7583-7602
0.008
9
6mer
4975-4987
0.003
7
6mer
6429-6447
0.002
1
HAND2-AS1
hsa-miR-143-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502896
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1053-1070
0.013
1
7mer
302-326
0.009
2
6mer
653-677
0.003
1
XLOC_006920
hsa-miR-143-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014545
Biotype: transcript isomorph
Gene id: XLOC_006920
Gene Name: XLOC_006920
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1101-1118
0.009
0
8mer
373-387
0.007
1
6mer
173-194
0.005
1
6mer
1071-1098
0.003
1
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