LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-557H15.4
hsa-miR-143-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418837
Biotype: lincRNA
Gene id: ENSG00000232310
Gene Name: RP11-557H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
458-482
0.015
5
8mer
266-290
0.010
0
RP11-468E2.10
hsa-miR-143-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000610486
Biotype: lincRNA
Gene id: ENSG00000276698
Gene Name: RP11-468E2.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-348
0.018
1
6mer
220-236
0.004
1
6mer
251-264
0.003
1
LINC01204
hsa-miR-143-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000435394
Biotype: lincRNA
Gene id: ENSG00000229563
Gene Name: LINC01204
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
988-1002
0.022
2
6mer
1506-1527
0.003
0
RP11-445N18.7
hsa-miR-143-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000427229
Biotype: processed_transcript
Gene id: ENSG00000243349
Gene Name: RP11-445N18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3176-3183
0.020
0
6mer
2998-3012
0.003
1
6mer
968-987
0.001
1
XLOC_012826
hsa-miR-143-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026204
Biotype: transcript isomorph
Gene id: XLOC_012826
Gene Name: XLOC_012826
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
494-521
0.025
1
MMP24-AS1
hsa-miR-143-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000453892
Biotype: antisense
Gene id: ENSG00000126005
Gene Name: MMP24-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-45
0.021
0
6mer
213-239
0.004
0
RP11-379K17.4
hsa-miR-143-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000600502
Biotype: antisense
Gene id: ENSG00000239219
Gene Name: RP11-379K17.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
287-310
0.025
3
XLOC_004375
hsa-miR-143-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009956
Biotype: transcript isomorph
Gene id: XLOC_004375
Gene Name: XLOC_004375
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
422-432
0.025
1
AP000997.2
hsa-miR-143-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564619
Biotype: lincRNA
Gene id: ENSG00000260254
Gene Name: AP000997.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1217-1238
0.015
5
6mer
6525-6550
0.003
6
6mer
1071-1094
0.002
0
6mer
6010-6029
0.002
1
7mer
2060-2077
0.002
Not Conserved
6mer
5728-5745
0.001
1
6mer
3019-3039
0.001
2
RP11-548M13.1
hsa-miR-143-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569661
Biotype: lincRNA
Gene id: ENSG00000260937
Gene Name: RP11-548M13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
126-144
0.025
1
RP11-299J3.8
hsa-miR-143-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609469
Biotype: antisense
Gene id: ENSG00000272758
Gene Name: RP11-299J3.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
294-312
0.025
1
STARD7-AS1
hsa-miR-143-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432267
Biotype: retained_intron
Gene id: ENSG00000204685
Gene Name: STARD7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-54
0.023
2
6mer
748-771
0.002
0
RP11-57H14.4
hsa-miR-143-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000564352
Biotype: sense_overlapping
Gene id: ENSG00000260917
Gene Name: RP11-57H14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3953-3972
0.018
3
7mer
1856-1875
0.003
2
7mer
2226-2246
0.002
1
6mer
1678-1697
0.001
1
RP11-73G16.1
hsa-miR-143-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515329
Biotype: lincRNA
Gene id: ENSG00000251249
Gene Name: RP11-73G16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2467-2484
0.021
1
6mer
806-818
0.004
4
SYP-AS1
hsa-miR-143-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000433499
Biotype: antisense
Gene id: ENSG00000237341
Gene Name: SYP-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
505-520
0.025
1
RP11-705O24.1
hsa-miR-143-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519967
Biotype: lincRNA
Gene id: ENSG00000254119
Gene Name: RP11-705O24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-216
0.025
1
RP11-525A16.4
hsa-miR-143-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609514
Biotype: lincRNA
Gene id: ENSG00000273143
Gene Name: RP11-525A16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-165
0.021
4
6mer
108-123
0.004
2
CTD-2047H16.4
hsa-miR-143-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000613190
Biotype: antisense
Gene id: ENSG00000263069
Gene Name: CTD-2047H16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-54
0.025
0
CTB-12O2.1
hsa-miR-143-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000523605
Biotype: lincRNA
Gene id: ENSG00000254226
Gene Name: CTB-12O2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-182
0.025
4
CDKN2B-AS1
hsa-miR-143-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000582072
Biotype: antisense
Gene id: ENSG00000240498
Gene Name: CDKN2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
63-76
0.020
1
6mer
803-827
0.004
1
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