LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-143-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
NOP14-AS1
hsa-miR-143-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515194
Biotype: antisense
Gene id: ENSG00000249673
Gene Name: NOP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
679-704
0.009
0
7mer
3043-3067
0.005
0
7mer
1677-1694
0.003
Not Conserved
7mer
1364-1380
0.003
0
6mer
82-101
0.003
0
6mer
276-289
0.003
0
6mer
1762-1781
0.001
0
TTC28-AS1
hsa-miR-143-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000454996
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
619-633
0.021
0
6mer
604-628
0.004
1
RP11-147C23.1
hsa-miR-143-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000598612
Biotype: lincRNA
Gene id: ENSG00000237435
Gene Name: RP11-147C23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-622
0.022
1
6mer
471-493
0.003
0
FAM95B1
hsa-miR-143-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000620585
Biotype: retained_intron
Gene id: ENSG00000274628
Gene Name: FAM95B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
184-202
0.020
0
7mer
1543-1561
0.003
0
6mer
2955-2981
0.002
0
RP11-73M7.6
hsa-miR-143-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000588288
Biotype: antisense
Gene id: ENSG00000235790
Gene Name: RP11-73M7.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-275
0.025
1
RP11-158I9.5
hsa-miR-143-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000498872
Biotype: antisense
Gene id: ENSG00000245869
Gene Name: RP11-158I9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1445-1462
0.015
0
7mer
1238-1260
0.006
2
6mer
1500-1520
0.004
2
RP3-405J10.3
hsa-miR-143-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552061
Biotype: sense_intronic
Gene id: ENSG00000257298
Gene Name: RP3-405J10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4457-4474
0.023
1
6mer
2860-2885
0.002
2
RP11-351M8.2
hsa-miR-143-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560873
Biotype: antisense
Gene id: ENSG00000259546
Gene Name: RP11-351M8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
449-470
0.015
1
6mer
275-293
0.005
4
7mer
238-250
0.004
0
TMEM254-AS1
hsa-miR-143-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000448729
Biotype: antisense
Gene id: ENSG00000230091
Gene Name: TMEM254-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-40
0.020
Not Conserved
6mer
1715-1738
0.003
0
6mer
1116-1123
0.002
Not Conserved
AC011525.4
hsa-miR-143-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590611
Biotype: lincRNA
Gene id: ENSG00000267465
Gene Name: AC011525.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1355-1360
0.014
5
6mer
1486-1501
0.011
10
XLOC_011261
hsa-miR-143-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023416
Biotype: transcript isomorph
Gene id: XLOC_011261
Gene Name: XLOC_011261
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-141
0.025
1
SH3PXD2A-AS1
hsa-miR-143-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038940.1
Biotype: antisense
Gene id: NR_038940.1 (gene)
Gene Name: SH3PXD2A-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
688-709
0.022
2
6mer
1123-1141
0.003
2
CTD-2196P11.2
hsa-miR-143-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511734
Biotype: lincRNA
Gene id: ENSG00000251189
Gene Name: CTD-2196P11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-42
0.021
4
6mer
253-266
0.004
1
RP11-386M24.3
hsa-miR-143-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000625146
Biotype: TEC
Gene id: ENSG00000258676
Gene Name: RP11-386M24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
173-193
0.009
0
6mer
1952-1970
0.009
1
6mer
657-674
0.004
2
6mer
354-375
0.003
1
CH17-302M23.1
hsa-miR-143-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000612576
Biotype: antisense
Gene id: ENSG00000275552
Gene Name: CH17-302M23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
779-801
0.010
0
6mer
73-87
0.010
3
6mer
2362-2381
0.002
0
6mer
949-972
0.002
0
RP11-435J9.2
hsa-miR-143-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000611703
Biotype: lincRNA
Gene id: ENSG00000274340
Gene Name: RP11-435J9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1316-1335
0.025
2
XLOC_009272
hsa-miR-143-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019459
Biotype: transcript isomorph
Gene id: XLOC_009272
Gene Name: XLOC_009272
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
726-735
0.025
1
XLOC_007918
hsa-miR-143-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017125
Biotype: transcript isomorph
Gene id: XLOC_007918
Gene Name: XLOC_007918
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1875-1890
0.021
Not Conserved
6mer
215-230
0.004
Not Conserved
XLOC_006529
hsa-miR-143-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013891
Biotype: transcript isomorph
Gene id: XLOC_006529
Gene Name: XLOC_006529
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4294-4312
0.019
1
7mer
1420-1439
0.006
4
RP11-640N11.2
hsa-miR-143-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000505153
Biotype: antisense
Gene id: ENSG00000250493
Gene Name: RP11-640N11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
181-195
0.008
2
7mer
2833-2857
0.004
1
7mer
1120-1144
0.003
1
6mer
1575-1593
0.003
4
7mer
2592-2613
0.002
1
6mer
921-947
0.002
0
6mer
840-863
0.002
0
6mer
3000-3016
0.001
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept