LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-143-3p


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Gene
miRNA
Score
DIANA Links
RP11-403N16.3
hsa-miR-143-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000565707
Biotype: lincRNA
Gene id: ENSG00000260564
Gene Name: RP11-403N16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1364-1376
0.014
1
6mer
631-645
0.008
10
6mer
784-798
0.003
4
RP11-154J22.1
hsa-miR-143-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560323
Biotype: antisense
Gene id: ENSG00000259488
Gene Name: RP11-154J22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-146
0.025
1
XLOC_004322
hsa-miR-143-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010648
Biotype: transcript isomorph
Gene id: XLOC_004322
Gene Name: XLOC_004322
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
294-312
0.015
Not Conserved
6mer
163-184
0.006
1
6mer
123-139
0.005
1
XLOC_001401
hsa-miR-143-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2311-2326
0.015
0
6mer
736-754
0.010
0
RP11-661C3.2
hsa-miR-143-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000579037
Biotype: sense_intronic
Gene id: ENSG00000265010
Gene Name: RP11-661C3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
151-174
0.025
1
CTC-261N6.1
hsa-miR-143-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511940
Biotype: lincRNA
Gene id: ENSG00000248363
Gene Name: CTC-261N6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
227-246
0.015
2
7mer
142-161
0.011
1
ACTA2-AS1
hsa-miR-143-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000596007
Biotype: antisense
Gene id: ENSG00000180139
Gene Name: ACTA2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
140-159
0.025
7
XLOC_010104
hsa-miR-143-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020815
Biotype: transcript isomorph
Gene id: XLOC_010104
Gene Name: XLOC_010104
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
199-211
0.025
Not Conserved
XLOC_010254
hsa-miR-143-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020989
Biotype: transcript isomorph
Gene id: XLOC_010254
Gene Name: XLOC_010254
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
568-579
0.013
0
7mer
1734-1756
0.012
0
RP11-438B23.2
hsa-miR-143-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566293
Biotype: sense_overlapping
Gene id: ENSG00000260412
Gene Name: RP11-438B23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3907-3922
0.006
0
6mer
860-874
0.005
9
7mer
4791-4812
0.004
5
6mer
5986-5998
0.003
4
6mer
4924-4943
0.002
1
6mer
846-859
0.002
5
6mer
3439-3464
0.001
1
6mer
4614-4630
0.001
1
6mer
3340-3367
0.001
2
TTC28-AS1
hsa-miR-143-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000419253
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
578-592
0.022
0
6mer
563-587
0.003
1
TMEM26-AS1
hsa-miR-143-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000389640
Biotype: antisense
Gene id: ENSG00000237233
Gene Name: TMEM26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
780-800
0.016
3
6mer
837-856
0.006
4
6mer
94-111
0.004
3
AC007038.7
hsa-miR-143-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452057
Biotype: antisense
Gene id: ENSG00000229127
Gene Name: AC007038.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1447-1468
0.014
2
6mer
307-332
0.005
3
6mer
1797-1819
0.003
1
6mer
1544-1561
0.002
1
6mer
1164-1182
0.002
1
AC091814.3
hsa-miR-143-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000420905
Biotype: lincRNA
Gene id: ENSG00000231560
Gene Name: AC091814.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1715-1731
0.011
1
8mer
2094-2118
0.008
1
7mer
3419-3442
0.003
Not Conserved
6mer
1796-1817
0.002
0
6mer
3925-3949
0.002
Not Conserved
RP11-797H7.5
hsa-miR-143-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000340779
Biotype: antisense
Gene id: ENSG00000189316
Gene Name: RP11-797H7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
986-1002
0.015
1
7mer
537-551
0.010
0
PCA3
hsa-miR-143-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000412654
Biotype: antisense
Gene id: ENSG00000225937
Gene Name: PCA3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
263-275
0.009
0
7mer
1082-1100
0.007
Not Conserved
6mer
2217-2222
0.004
8
6mer
3370-3389
0.002
Not Conserved
6mer
2851-2865
0.002
4
6mer
2733-2753
0.002
1
LINC00824
hsa-miR-143-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520824
Biotype: retained_intron
Gene id: ENSG00000254275
Gene Name: LINC00824
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
23-45
0.021
Not Conserved
6mer
189-212
0.005
1
SNHG1
hsa-miR-143-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000539921
Biotype: lincRNA
Gene id: ENSG00000255717
Gene Name: SNHG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
962-987
0.025
2
XLOC_008510
hsa-miR-143-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018230
Biotype: transcript isomorph
Gene id: XLOC_008510
Gene Name: XLOC_008510
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
323-330
0.025
1
LINC00152
hsa-miR-143-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000409054
Biotype: lincRNA
Gene id: ENSG00000222041
Gene Name: LINC00152
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-143-3p
Sequence: ugagaugaagcacuguagcuc
MirBase ID: MIMAT0000435
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-61
0.020
5
6mer
1003-1023
0.005
4
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